Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colius_20striatus_20[refseq_20GCF_5F000690715.1_202014-05-13] 70,188 sequences; 1,075,931,597 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq46745 215 8e-50 seq6333 214 3e-49 seq19560 183 5e-40 seq18728 150 3e-30 seq46051 102 1e-15 seq54367 93.3 7e-13 seq51162 87.8 3e-11 >seq46745 Length=8286 Score = 215 bits (238), Expect = 8e-50 Identities = 194/244 (80%), Gaps = 0/244 (0%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||| |||||||| ||||| || ||||||||| ||||||| |||||| ||| Sbjct 452 TGTACTTGGTGACAGCCTTGGTGCCCTCGGACACGGCGTGCTTGGCCAGCTCGCCGGGCA 393 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | ||| |||||||| ||||||||||| || | ||| ||| ||||||||| | Sbjct 392 GCAGCAGCCGCACGGCCGTCTGGATCTCCCGCGACGTGATGGTGGAGCGCTTGTTGTAGT 333 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 |||||||||| ||||||| | ||||||| |||| ||||||||||| || ||||||| Sbjct 332 GCGCCAGGCGCGAGGCCTCGCCGGCGATGCGCTCGAAGATGTCGTTGACGAAGGAGTTCA 273 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | ||| |||||||| |||||||||||||||||| |||||||||| Sbjct 272 TGATGCCCATGGCCTTGGACGAGATGCCGGTGTCGGGGTGCACCTGCTTCAGCACCTTGT 213 Query 1485710 AAAC 1485713 | || Sbjct 212 ACAC 209 Score = 194 bits (214), Expect = 3e-43 Identities = 190/244 (78%), Gaps = 7/244 (3%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||| |||||||| ||||| || ||||||||| ||||||| |||||| ||| Sbjct 1418 TGTACTTGGTGACAGCCTTGGTGCCCTCGGACACGGCGTGCTTGGCCAGCTCGCCGGGCA 1477 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | ||| |||||||| ||||||||||| || | | | | |||||| | |||| Sbjct 1478 GCAGCAGCCGCACGGCCGTCTGGATCTCCCGCGACCGGCTTGTGTTGTG-----TAGT-- 1530 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 |||||||||| ||||||| | ||||||| |||| ||||||||||| || ||||||| Sbjct 1531 GCGCCAGGCGCGAGGCCTCGCCGGCGATGCGCTCGAAGATGTCGTTGACGAAGGAGTTCA 1590 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | ||| |||||||| ||||||||||||||||| ||||| |||| Sbjct 1591 TGATGCCCATGGCCTTGGACGAGATGCCGGTATCGGGGTGCACCTGCTTCAGCACTTTGT 1650 Query 1485710 AAAC 1485713 | || Sbjct 1651 ACAC 1654 >seq6333 Length=1021 Score = 214 bits (236), Expect = 3e-49 Identities = 201/256 (79%), Gaps = 0/256 (0%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||| |||||||| ||||| || ||||||||| ||||||| |||||| ||| Sbjct 827 TGTACTTGGTGACAGCCTTGGTGCCCTCGGACACGGCGTGCTTGGCCAGCTCGCCGGGCA 768 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | ||| |||||||| ||||||||||| || | ||| ||| ||||||||| | Sbjct 767 GCAGCAGCCGCACGGCCGTCTGGATCTCCCGCGACGTGATGGTGGAGCGCTTGTTGTAGT 708 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 |||||||||| ||||||| | ||||||| |||| ||||||||||| || ||||||| Sbjct 707 GCGCCAGGCGCGAGGCCTCGCCGGCGATGCGCTCGAAGATGTCGTTGACGAAGGAGTTCA 648 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | ||| |||||||| ||||||||||||||||| |||||||||| Sbjct 647 TGATGCTCATGGCCTTGGACGAGATGCCGGTATCGGGGTGCACCTGCTTCAGCACCTTGT 588 Query 1485710 AAACAAAGGACGAGTA 1485725 | || || |||||| Sbjct 587 ACACGTAGATCGAGTA 572 >seq19560 Length=43182 Score = 183 bits (202), Expect = 5e-40 Identities = 194/256 (76%), Gaps = 0/256 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||||||||||||||| ||||||||||| |||||| ||||||| || || | | Sbjct 28606 TGTACTTGGTGACGGCCTTGGTGCCCTCTGAGACAGCGTGCTTGGCCAGCTCTCCCGGGA 28665 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | |||||||||||| ||||||||||| || | | ||| || ||||||||| Sbjct 28666 GCAGCAGGCGCACGGCCGTCTGGATCTCCCGCGAGGTGATGGTTGAGCGCTTGTTGTAAT 28725 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 | ||||||||| || || | ||||| || | ||||||||||| || ||||||| Sbjct 28726 GGGCCAGGCGGGACGCTTCCCCAGCAATGCGCTCAAAGATGTCGTTGACGAAGGAGTTCA 28785 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | ||| |||||||| ||||||||| |||||||| |||||||||| Sbjct 28786 TGATGCCCATGGCCTTGGAAGAGATGCCAGTGTCGGGGTGGACCTGCTTCAGCACCTTGT 28845 Query 1485710 AAACAAAGGACGAGTA 1485725 | ||| || ||||| Sbjct 28846 AGACATAGATGGAGTA 28861 >seq18728 Length=10059 Score = 150 bits (166), Expect = 3e-30 Identities = 176/244 (72%), Gaps = 24/244 (10%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||| |||||||| ||||| || ||||||||| ||||||| |||||| ||| Sbjct 9347 TGTACTTGGTGACAGCCTTGGTGCCCTCGGACACGGCGTGCTTGGCCAGCTCGCCGGGCA 9406 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | ||| |||||||| ||||||||||| || | ||| ||| ||||||||| | Sbjct 9407 GCAGCAGCCGCACGGCCGTCTGGATCTCCCGCGACGTGATGGTGGGGCGCTTGTTGTAGG 9466 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 |||||| | |||| ||||||||||| || ||||||| Sbjct 9467 GCGCCA------------------------GCTCGAAGATGTCGTTGACGAAGGAGTTCA 9502 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | ||| |||||||| |||||||||||||||||| |||||||||| Sbjct 9503 TGATGCCCATGGCCTTGGACGAGATGCCGGTGTCGGGGTGCACCTGCTTCAGCACCTTGT 9562 Query 1485710 AAAC 1485713 | || Sbjct 9563 ACAC 9566 >seq46051 Length=1320 Score = 102 bits (112), Expect = 1e-15 Identities = 77/91 (85%), Gaps = 0/91 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||| |||||||| ||||| || ||||||||| ||||||| |||||| ||| Sbjct 511 TGTACTTGGTGACAGCCTTGGTGCCCTCGGACACGGCGTGCTTGGCCAGCTCGCCGGGCA 570 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCG 1485560 | ||| | |||||| ||||||||||| || Sbjct 571 GCAGCAGCCTCACGGCCGTCTGGATCTCCCG 601 >seq54367 Length=7739 Score = 93.3 bits (102), Expect = 7e-13 Identities = 89/114 (78%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 796303 ACCTCCTCGGCGGTCCAAAAGGAGGCCTCGGCCTTTTTGTACATCTCCCATATCCGTTGG 796362 |||||||| || ||||| ||||| ||||||||||| |||||||||| ||| || ||| Sbjct 7428 ACCTCCTCCGCCGTCCAGAAGGAAGCCTCGGCCTTCTTGTACATCTGCCAAATATCATGG 7487 Query 796363 TAGCGGATGGGGAACAGAACAAAGCGATTGGGGTTCTCGCGTAGCAGCGGCTCG 796416 || ||||||||| | |||||||| ||||| || || |||||||| ||| Sbjct 7488 TACTCGATGGGGAAGATGACAAAGCGGCGAGGGTTGTCCCGCAGCAGCGGTTCG 7541 >seq51162 Length=873 Score = 87.8 bits (96), Expect = 3e-11 Identities = 98/131 (75%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 2071579 ACGACCTCGGTGCACAGGTTGGCCGACATCGTGGTGCCCAGGTTCTGCTGGTTGCTGGTC 2071638 |||| ||| |||||||||||| | | |||| |||||||||||||||||||| || Sbjct 522 ACGATCTCCGTGCACAGGTTGCTGCATTTGATGGTCCCCAGGTTCTGCTGGTTGCTCTTC 463 Query 2071639 AGGTTGACGGCGTCCTTGTGCAGCATGTAGGGCGCACCCGTCTCGATCTGCGCCGTGACG 2071698 |||| || ||| |||| ||||||||||| | || |||||| |||| | | || | Sbjct 462 CTGTTGCAGGAGTCTTTGTAGAGCATGTAGGGGGTGCCAGTCTCGGTCTGGGACTCGATG 403 Query 2071699 ATGGCCGACCA 2071709 ||||| |||| Sbjct 402 ATGGCGTACCA 392 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7908780182312532