Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colius_20striatus_20[refseq_20GCF_5F000690715.1_202014-05-13] 70,188 sequences; 1,075,931,597 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq25250 152 3e-32 seq30392 138 7e-28 >seq25250 Length=4203 Score = 152 bits (168), Expect = 3e-32 Identities = 171/229 (75%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 34749 TTCCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCG 34808 |||| ||||||| | ||| || || || | ||| ||||||||| ||||| ||||| | Sbjct 3340 TTCCACCCCTCAGGCGCAGCACAAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAG 3399 Query 34809 ATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCG 34868 | ||| |||| |||| ||||| || || || ||||||||||| | |||||||| | | Sbjct 3400 ACAGGGTGCGTCCATCTTCCAGCTGTTTGCCAGCGAAGATCAGCCTCTGCTGGTCGGGGG 3459 Query 34869 GCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGA 34928 | | ||||| ||||| | || || |||||| | |||| | ||| ||| ||||| Sbjct 3460 GAATGCCCTCTTTGTCCTGGATCTTGGCCTTGACGTTTTCTATGGTGTCACTGGGCTCGA 3519 Query 34929 CATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 | || | ||| |||||||| || || |||||||| |||||||||||||| Sbjct 3520 CTTCCAAGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 3568 Score = 141 bits (156), Expect = 6e-29 Identities = 171/231 (74%), Gaps = 4/231 (2%) Strand=Plus/Plus Query 34749 TTCCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCG 34808 |||| |||| || | |||||| || || | |||| ||| ||||| ||||| ||||| | Sbjct 3796 TTCCACCCCGCAGGCGCAGGACAAGATGGAGGGTGGACTCTTTCTGGATGTTGTAGTCAG 3855 Query 34809 ATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCG 34868 | ||| |||| | || |||||||| || || ||||||||||| | |||||||| | | Sbjct 3856 ACAGGGTGCGTCCGTCTTCCAGTTGTTTGCCAGCGAAGATCAGCCTCTGCTGGTCGGGGG 3915 Query 34869 GCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTC 34926 | | ||||| ||||| | || || |||||| || || || | ||| ||| ||| Sbjct 3916 GAATGCCCTCTTTGTCTTGGATCTTGGCTTTGAC--ATTCTCGATGGTATCACTGGGCTC 3973 Query 34927 GACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 ||| || | || |||||||| || || |||||||| |||||||||||||| Sbjct 3974 GACTTCCAGAGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 4024 Score = 125 bits (138), Expect = 5e-24 Identities = 168/232 (72%), Gaps = 4/232 (2%) Strand=Plus/Plus Query 34748 TTTCCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCC 34807 || || ||||||| | |||||| || || | || ||||| || ||||| ||||| Sbjct 3111 TTGCCACCCCTCAGGCGCAGGACAAGATGCAGAGTAGATTCCTTTTGGATGTTGTAGTCA 3170 Query 34808 GATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGC 34867 || ||| | || | || |||||||| || || ||||||||||| | ||||| || | Sbjct 3171 GACAGGGTACGTCCGTCTTCCAGTTGTTTGCCAGCGAAGATCAGCCTCTGCTGATCAGGG 3230 Query 34868 GGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCT 34925 || | ||||||||||| | || || ||||| || || || | ||| ||| || Sbjct 3231 GGAATGCCCTCCTTGTCCTGGATCTTGGCCTTGAC--ATTCTCAATGGTATCACTGGGCT 3288 Query 34926 CGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 |||| || | ||| |||||||| || || |||||||| |||||||||||||| Sbjct 3289 CGACTTCCAAGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 3340 Score = 125 bits (138), Expect = 5e-24 Identities = 165/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 34749 TTCCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCG 34808 |||| ||||||| | ||||| || || | || ||||| || ||||| ||||| | Sbjct 3568 TTCCACCCCTCAGGCGTAGGACAAGATGCAGAGTAGATTCCTTTTGGATGTTGTAGTCAG 3627 Query 34809 ATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCG 34868 | ||| |||| | || |||||||| || || || |||||||| | ||||| || | | Sbjct 3628 ACAGGGTGCGTCCGTCTTCCAGTTGTTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGG 3687 Query 34869 GCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGA 34928 | | ||||||||||| | || || |||||| | || | ||| ||| ||||| Sbjct 3688 GAATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCAATGGTATCACTGGGCTCGA 3747 Query 34929 CATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 | || | ||| |||||||| || || |||||||| |||||||||||||| Sbjct 3748 CTTCCAAGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 3796 >seq30392 Length=48271 Score = 138 bits (152), Expect = 7e-28 Identities = 169/229 (74%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810 || ||||||| | ||| || || || | ||| ||||||||| ||||| ||||| || Sbjct 47834 CCACCCCTCAGGCGCAGCACAAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAC 47893 Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870 ||| |||| |||| ||||| ||||| ||||| |||||||| | |||||||| | || Sbjct 47894 AGGGTGCGTCCATCTTCCAGCTGCTTCCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGA 47953 Query 34871 ACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGA 34928 | || |||||||| | || || || || || || || | ||| ||| ||||| Sbjct 47954 ATGCCTTCCTTGTCCTGGATCTTGGCCTTCAC--ATTCTCAATGGTGTCACTGGGCTCGA 48011 Query 34929 CATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 | || | ||| |||||||| || || |||||||| |||||||||||||| Sbjct 48012 CTTCCAAGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 48060 Score = 129 bits (142), Expect = 4e-25 Identities = 167/229 (73%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810 || ||||||| | ||| || ||||| | ||| ||||||||| ||||| ||||| || Sbjct 47606 CCACCCCTCAGGCGCAGCACAAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAC 47665 Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870 ||| |||| |||| ||||| ||||| || || |||||||| | |||||||| | || Sbjct 47666 AGGGTGCGTCCATCTTCCAGCTGCTTCCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGA 47725 Query 34871 ACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGA 34928 | || |||||||| | || || || || || || || | ||| | | ||| | Sbjct 47726 ATGCCTTCCTTGTCCTGGATCTTGGCCTTCAC--ATTCTCAATGGTGTCACTAGGCTCAA 47783 Query 34929 CATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 | || | ||| |||||||| || || |||||||| |||||||||||||| Sbjct 47784 CCTCGAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 47832 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325414197086372