Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colius_20striatus_20[refseq_20GCF_5F000690715.1_202014-05-13] 70,188 sequences; 1,075,931,597 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq26914 102 6e-16 seq51350 87.8 1e-11 >seq26914 Length=37399 Score = 102 bits (112), Expect = 6e-16 Identities = 98/126 (78%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 131176 TGTAGTAGCCACAATAGCATTTGGTATGGGTATTAATAAACCGGATGTTAGAGTTGTTAT 131235 ||| || || ||| | |||||||| ||||| || |||||| | ||| | | | ||||| Sbjct 17914 TGTTGTGGCTACAGTGGCATTTGGCATGGGCATCAATAAAGCAGATATCCGGTTGGTTAT 17973 Query 131236 TCATTACGGAGCTCCCAAGAATATTGAAGGTTATTATCAAGAAATTGGTAGAGCAGGTCG 131295 ||||||||| || || ||| | || ||| ||||||||||||||||| |||| ||||| Sbjct 17974 TCATTACGGTGCCCCTAAGGAAATGGAATCCTATTATCAAGAAATTGGGCGAGCTGGTCG 18033 Query 131296 TGATGG 131301 |||||| Sbjct 18034 TGATGG 18039 >seq51350 Length=39487 Score = 87.8 bits (96), Expect = 1e-11 Identities = 96/128 (75%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 400304 TAATTTTGACAGAGGGAGATTCAGCTAAAACATTCGCTATGTCTGGCCTTAATGTTATTG 400363 |||| || ||||||||||| || || ||| | || ||| | |||||||| |||||||| Sbjct 20996 TAATATTAACAGAGGGAGACTCTGCCAAATCTTTAGCTGTCTCTGGCCTAGGTGTTATTG 21055 Query 400364 GAAGAGATTATTATGGAGTTTTCCCACTTAGAGGAAAACTTTTGAATGTTAGGGATGCTA 400423 | ||||| |||||||| |||||||| || || ||| || | || ||| | || ||| Sbjct 21056 GTAGAGACAGATATGGAGTGTTCCCACTCAGGGGTAAAATTCTCAACGTTCGAGAAGCTT 21115 Query 400424 GTCCTAAA 400431 || |||| Sbjct 21116 CTCATAAA 21123 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3737184465814488