Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colius_20striatus_20[refseq_20GCF_5F000690715.1_202014-05-13] 70,188 sequences; 1,075,931,597 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq25250 178 3e-39 seq30392 149 1e-30 seq33368 118 2e-21 >seq25250 Length=4203 Score = 178 bits (196), Expect = 3e-39 Identities = 176/228 (77%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || || |||| ||||| || | |||||||||||||| || || || || || ||||| Sbjct 3114 CCACCCCTCAGGCGCAGGACAAGATGCAGAGTAGATTCCTTTTGGATGTTGTAGTCAGAC 3173 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 || | | |||||||| |||||||| ||||| ||||| || || || ||||| || || Sbjct 3174 AGGGTACGTCCGTCTTCCAGTTGTTTGCCAGCGAAGATCAGCCTCTGCTGATCAGGGGGA 3233 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || || ||||| || || ||||| || || ||||| ||||| |||||| | || || ||| Sbjct 3234 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTCTCAATGGTATCACTGGGCTCGACT 3293 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 ||||| || || |||||||| |||| ||||| ||||| ||||||||| Sbjct 3294 TCCAAGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATT 3341 Score = 172 bits (190), Expect = 1e-37 Identities = 175/228 (77%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || || |||| || || || | |||||||||||||| || || || || || ||||| Sbjct 3570 CCACCCCTCAGGCGTAGGACAAGATGCAGAGTAGATTCCTTTTGGATGTTGTAGTCAGAC 3629 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 || | | |||||||| |||||||| ||||||||||| || || || ||||| || || Sbjct 3630 AGGGTGCGTCCGTCTTCCAGTTGTTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGGGA 3689 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || || ||||| || || ||||| || || || || ||||| |||||| | || || ||| Sbjct 3690 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCAATGGTATCACTGGGCTCGACT 3749 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 ||||| || || |||||||| |||| ||||| ||||| ||||||||| Sbjct 3750 TCCAAGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATT 3797 >seq30392 Length=48271 Score = 149 bits (164), Expect = 1e-30 Identities = 169/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || || |||| ||||| || | ||| ||||| || || ||||| || || || ||||| Sbjct 47606 CCACCCCTCAGGCGCAGCACAAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAC 47665 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 || | | || ||||| || || || ||||||||||| || || || || || || || Sbjct 47666 AGGGTGCGTCCATCTTCCAGCTGCTTCCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGA 47725 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || |||||||| || || ||||| || || ||||| ||||| || ||| |||| || || Sbjct 47726 ATGCCTTCCTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTAGGCTCAACC 47785 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || | || || |||||||| |||| ||||| ||||| |||||||| Sbjct 47786 TCGAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 47832 Score = 127 bits (140), Expect = 4e-24 Identities = 151/205 (74%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || || |||| ||||| || | || ||||| || || ||||| || || || ||||| Sbjct 48062 CCACCCCTCAGGCGCAGCACAAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAC 48121 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 || | | ||||| || || || || ||||||||||| || || || || || || || Sbjct 48122 AGGGTGCGTCCGTCCTCCAGCTGCTTCCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGA 48181 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || |||||||| |||||||| || || || ||||| ||||| || ||| | || || || Sbjct 48182 ATGCCTTCCTTGTCTTGAATTTTAGCCTTCACATTCTCAATGGTGTCACTGGGCTCAACC 48241 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCA 82788 || | ||| || |||||||| |||| Sbjct 48242 TCAAGAGTGATGGTCTTGCCAGTCA 48266 >seq33368 Length=40093 Score = 118 bits (130), Expect = 2e-21 Identities = 124/163 (76%), Gaps = 0/163 (0%) Strand=Plus/Minus Query 60149 GCATTATGGTGGTACTATATATCTAAAGGTATAGAATACTTAGATACGGTGTTTTTCATA 60208 || ||||||||||| ||| | |||||||| || ||||| || || || || || ||||| Sbjct 25340 GCTTTATGGTGGTATTATGTCTCTAAAGGAATTGAATATTTGGACACAGTATTCTTCATC 25281 Query 60209 CTTAGGAAAAAGTTTAATCAGGTTAGTTTTTTACACGTATATCATCATTTTACTATGTTT 60268 || ||||| |||||||| || ||||||| | || || ||||| ||||| || ||||| Sbjct 25280 CTGAGGAAGAAGTTTAACCAAATTAGTTTCCTTCATGTCTATCACCATTTCACCATGTTC 25221 Query 60269 ACTTTAGGATGGGTAGGCATTAAATGGTTTGCCGGAGGTCAAG 60311 || || | ||| | || ||||| ||| |||| || || |||| Sbjct 25220 ACCTTGTGGTGGATTGGTATTAAGTGGGTTGCAGGTGGACAAG 25178 Score = 87.8 bits (96), Expect = 4e-12 Identities = 104/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 60443 CAATTCCATATAGCTATAGGACATACCGCTATGTCCATTTACATAGATTGTCCGTTTCCA 60502 || ||||| | |||| || || || || ||||| ||||| || |||||||| || || Sbjct 21662 CAGTTCCACGTGACTATTGGCCACACAGCCATGTCTATTTATATTGATTGTCCTTTCCCT 21603 Query 60503 AAATGGACACAATGGTCAGTTATCATTTATTCTATTACTTTTATATTACTGTTTGGTAAC 60562 ||||||| || ||| || || | ||| |||| || || || || |||||||||||| Sbjct 21602 AAATGGATGCACTGGGGTGTCATTTTCTATGCTATCACCTTCATTTTCCTGTTTGGTAAC 21543 Query 60563 TTCTATTTTAGAACATACAAG 60583 ||||| | | | ||||| ||| Sbjct 21542 TTCTACTATCGGACATATAAG 21522 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 980944258753732