Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colius_20striatus_20[refseq_20GCF_5F000690715.1_202014-05-13] 70,188 sequences; 1,075,931,597 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq30392 125 7e-24 seq25250 116 4e-21 seq51162 105 6e-18 >seq30392 Length=48271 Score = 125 bits (138), Expect = 7e-24 Identities = 148/198 (75%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 |||||||| ||||| || ||||| ||| || ||| | | | || || |||||||| || Sbjct 47864 GTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCA-TCTTCCAGCTGCTTCCC 47922 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 || | || |||| ||||||||| || || |||||||||||||| |||||| ||| Sbjct 47923 GGCAAAGATCAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTGTCCTGGATCTTGGCCTT 47982 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 | | ||||| ||||| ||||||| || || | ||||| ||| ||||| ||||| || Sbjct 47983 CACATTCTCAATGGTGTCACTGGGCTCGACTTCCAAGGTGATGGTCTTGCCAGTCAGGGT 48042 Query 133643 TTTTACGAAAATCTGCAT 133660 || || || |||||||| Sbjct 48043 CTTCACAAAGATCTGCAT 48060 Score = 120 bits (132), Expect = 3e-22 Identities = 147/198 (74%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 |||||||| ||||| || ||||| || || ||| | | | || || |||||||| || Sbjct 47636 GTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGTCCA-TCTTCCAGCTGCTTCCC 47694 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 || | || |||| ||||||||| || || |||||||||||||| |||||| ||| Sbjct 47695 AGCAAAGATCAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTGTCCTGGATCTTGGCCTT 47754 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 | | ||||| ||||| | ||||| || |||| ||||| ||| ||||| ||||| || Sbjct 47755 CACATTCTCAATGGTGTCACTAGGCTCAACCTCGAGGGTGATGGTCTTGCCAGTCAGGGT 47814 Query 133643 TTTTACGAAAATCTGCAT 133660 || || || |||||||| Sbjct 47815 CTTCACAAAGATCTGCAT 47832 Score = 102 bits (112), Expect = 8e-17 Identities = 132/180 (73%), Gaps = 2/180 (1%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523 |||||||| ||||| || ||||| || || ||| |||||| |||||||| || Sbjct 48092 GTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGTCCGTCCTCCAGCTGCTTCCCA 48151 Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTG-CTT 133582 || | || |||| ||||||||| || || |||||||||||||| ||| ||| | ||| Sbjct 48152 GCAAAGATCAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTGTC-TTGAATTTTAGCCTT 48210 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 | | ||||| ||||| ||||||| || || | |||| ||| ||||| ||||| || Sbjct 48211 CACATTCTCAATGGTGTCACTGGGCTCAACCTCAAGAGTGATGGTCTTGCCAGTCAGGGT 48270 >seq25250 Length=4203 Score = 116 bits (128), Expect = 4e-21 Identities = 146/198 (74%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 |||||||| ||||| || ||||| || || ||| | | | || || ||||| ||||| Sbjct 3372 GTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGTCCA-TCTTCCAGCTGTTTGCC 3430 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 ||| | || |||| |||||||||||| || ||||| || ||||| |||||| ||| Sbjct 3431 AGCGAAGATCAGCCTCTGCTGGTCGGGGGGAATGCCCTCTTTGTCCTGGATCTTGGCCTT 3490 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 || | || | ||||| ||||||| || || | ||||| ||| ||||| ||||| || Sbjct 3491 GACGTTTTCTATGGTGTCACTGGGCTCGACTTCCAAGGTGATGGTCTTGCCAGTCAGGGT 3550 Query 133643 TTTTACGAAAATCTGCAT 133660 || || || |||||||| Sbjct 3551 CTTCACAAAGATCTGCAT 3568 Score = 111 bits (122), Expect = 2e-19 Identities = 147/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTG 133516 ||| | ||||||||||||||| || ||||| || || ||| ||| || || || Sbjct 3821 ATGGAGGGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGTCCGTCTTCCAGTTG 3880 Query 133517 CTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTT 133576 ||||| ||| | || |||| |||||||||||| || ||||| || ||||| |||||| Sbjct 3881 TTTGCCAGCGAAGATCAGCCTCTGCTGGTCGGGGGGAATGCCCTCTTTGTCTTGGATCTT 3940 Query 133577 TTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGT 133636 |||| | ||| | || || ||||||| || || | |||| ||| ||||| || Sbjct 3941 GGCTTTGACATTCTCGATGGTATCACTGGGCTCGACTTCCAGAGTGATGGTCTTGCCAGT 4000 Query 133637 CAGAGTTTTTACGAAAATCTGCAT 133660 ||| || || || || |||||||| Sbjct 4001 CAGGGTCTTCACAAAGATCTGCAT 4024 >seq51162 Length=873 Score = 105 bits (116), Expect = 6e-18 Identities = 99/126 (79%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 148850 CTCATCCGGGGCGCTGTACTCTACGATCTCGGCGCACAGATTGCTGCATTTGATCACGCC 148909 ||||||| | | ||||||| |||||||| | |||||| |||||||||||||| || Sbjct 544 CTCATCCTTGCTGGTGTACTCCACGATCTCCGTGCACAGGTTGCTGCATTTGATGGTCCC 485 Query 148910 CACGTTCTTTTGATTGCTCTTGCTGTTGCACGCGTCCTTGTACAGCATGTACGGTCCGCC 148969 || ||||| || |||||||| |||||||| | ||| ||||| |||||||| || ||| Sbjct 484 CAGGTTCTGCTGGTTGCTCTTCCTGTTGCAGGAGTCTTTGTAGAGCATGTAGGGGGTGCC 425 Query 148970 AGTTTC 148975 ||| || Sbjct 424 AGTCTC 419 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 482996670761120