Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colius_20striatus_20[refseq_20GCF_5F000690715.1_202014-05-13] 70,188 sequences; 1,075,931,597 total letters Query= NC_024696.1 Length=180800 Score E Sequences producing significant alignments: (Bits) Value seq17576 122 1e-22 seq6155 100 3e-16 >seq17576 Length=9823 Score = 122 bits (134), Expect = 1e-22 Identities = 540/846 (64%), Gaps = 22/846 (3%) Strand=Plus/Minus Query 162160 ATCCAATTAAGATCCCCCGATCCGAACACGCACACGGACCGCACGTGCACGCCGCTGCAC 162219 ||||| || || || || || || || || || || || | ||| || || || ||| Sbjct 9201 ATCCAGTTCAGGTCACCTACCCCAAAAACACAGACAGAGCGAATGTGAACTCCACTACAC 9142 Query 162220 GGCGGATACAGGGCCCCATCGTCCACATCCCCCTCGTAGTATTGCCACTTAACGAACCTA 162279 || || || | || || | | |||||| || || |||| |||||||| || ||||| Sbjct 9141 GGTGGGTAGGGTGCACCTTTGGACACATCACCTTCAAAGTACTGCCACTTGACAAACCTG 9082 Query 162280 GTGATAGCCTGCATGTCGGAGGTGTCGTACTTGTACACT-GACGGCACGGCTCCAGGAAC 162338 | | || | |||||| || ||||||||||| | || || | || || || || || Sbjct 9081 GCCAGTGCATTCATGTCAGAAACGTCGTACTTGT-CGCTAGAAGAAACTGCACCCGGGAC 9023 Query 162339 ACCCGGCAGTCTCTGTAGAGTAGCCCACAGGTGTTCGTCTGGACTATACGTCTCCTTCGA 162398 | || | |||||| | || ||||| | || || |||||||| || || || || | Sbjct 9022 TTCGGGGATTCTCTGAATTGTTGCCCATAAGTACTCATCTGGACTGTAAGTGTCTTTTGC 8963 Query 162399 CCACTCCATGAACTCCCTGACCGTTTT---ATCGTATAGAATGTAAGAGACGTAGGACCT 162455 |||||| ||||| | | | |||| | | || | ||| || | || Sbjct 8962 CCACTCAATGAATT---TAAGTATTTTGCCACTTTCTAATACGTATTCCACAAACTTTCT 8906 Query 162456 GGTCACAATAAAGTACGCGCTACCAGAAAACACGGGTATGCGTATAGGAGGGGGCTCTTT 162515 | | || | || || || ||||||||||| | || | | | ||| || | | || Sbjct 8905 GCTAACTACGAAATAGGCACTACCAGAAAAAATTGGAGTACCGAGAGGTGGTAGTTGCTT 8846 Query 162516 GTCTTGACCCGTGTTGACTACCATTCCCTCTACGACCACGTGTCTCTTCCTCCACCTGGC 162575 |||| ||| ||||| || | || || | | | | || || |||| || Sbjct 8845 GTCTACACCTGTGTTCTTTATTTTACCATCAATAATCTCATGGTGTTTTTTCCATCT--- 8789 Query 162576 CATCTTACTGGTAGACGGG----TGTTCGGTCTCTAGACTGTTACGACCCCCCAAGGCCT 162631 || ||| | || || || | || || || | ||||| ||| | ||| | Sbjct 8788 CA-CTTCTTTATAAACAGGCATTTTCTCTGTTTCCAAGCTGTTTTCACCTTTAAGGGCTT 8730 Query 162632 TCAGCTGACGCACCATCTCTAGATTGGTCTTAAGGGGAAAGTCGGTGCCGCAGAGATTAA 162691 | | | || || ||| | |||||||| | ||||||||| || ||||| || | Sbjct 8729 TTAATTTCTCTACTATTTCTTGGTTGGTCTTTATGGGAAAGTCCAGACCACAGAGGTTTA 8670 Query 162692 TAACATATTTCCACTTAACGCTGAGTCCGTACAGATCCTGTAGACAGTTCAGATCGGCCT 162751 | | |||||||| || || || ||| ||||| | | ||||| | ||| |||| Sbjct 8669 TTAGGTATTTCCAGTTTGAACTTCTTCTGTAGAGATCTTTCATGCAGTTAATATCTGCCT 8610 Query 162752 GGACGCGACTCCACGACGCGTACACGACGCTCTCCAACCTAGTGGCGACAAAGACATTGT 162811 | || | ||||| || || || || || ||||| ||| ||| | ||||||||| | Sbjct 8609 GCACCCTGCTCCATGAAGCATAAACAACACTCTCTAACTGGCTGGAAATAAAGACATTCT 8550 Query 162812 CGAAACACGAAACTATCCCCATCACGGCCAGTGAGAACA---TCGGGTCCGCTTTCCTAT 162868 | ||||| || ||||| ||| |||| | ||| | || | || || | || | | Sbjct 8549 CAAAACATGAGACTATTCCCTTCACAG-CAGCAAAAAAAGATTCTGG--AGACTTTTTGT 8493 Query 162869 CTACGTGTACGCAGTATAGATTCTGAGGGGCGTAGATGGCCCTCAGTAATCTCTCGAACA 162928 | || || | |||||| | ||| |||||||| ||||| | || | | ||| || |||| Sbjct 8492 CAACATGAATGCAGTAAAAATTTTGAGGGGCATAGATTGATCTTAAAAGTCTATCAAACA 8433 Query 162929 TCTCTATCTTATGGTGTACCACGATAGAATACGCTATGGGGAACTCAGCCTCCTCGCGAC 162988 | ||||| || || | ||||| || || || || || || || || || || || | Sbjct 8432 TATCTATTTTGTGATAAACCACTATCGAGTAAGCAATTGGAAATTCTGCTTCTTCAGTGC 8373 Query 162989 TGAGAG 162994 |||||| Sbjct 8372 TGAGAG 8367 >seq6155 Length=1204 Score = 100 bits (110), Expect = 3e-16 Identities = 249/375 (66%), Gaps = 15/375 (4%) Strand=Plus/Minus Query 162611 TGTTACGACCCCCCAAGGCCTTCAGCTGACGCACCATCTCTAGATTGGTCTTAAGGGGAA 162670 |||| || ||| || ||||||| ||| |||||||| ||||||||| | ||| | Sbjct 527 TGTTCCGCCCCTGCAGCACCTTCAGGGCACGGACCATCTCAGCATTGGTCTTGATGGGGA 468 Query 162671 AGTCGGTGCCGCAGAGATTAATAACATATTTCCACTTAACGCTGAGTCCGTACAGATCCT 162730 | |||| ||| ||| ||| | ||||| ||||| ||| | | ||| |||| Sbjct 467 AATCGGCGCCACAGGTATTGAGGACATAGTTCCAGGGGACGGGGCTCTCCAGCAGGTCCT 408 Query 162731 GTAGACAGTTCAGATCGGCCTGGACGCGACTCCACGACGCGTACACGACGCTCTCCAACC 162790 | | ||||| || |||||||| | || ||| || || | | || | | Sbjct 407 GCATGCAGTTGAGGTCGGCCTGCAGCCGGGACCAGGAGGC-TCCGCGGGGGGTTA----- 354 Query 162791 TAGTGGCGACAAAGACATTGTCGAAACACGAAACTATCCCCATCACGGCCAGTGAGAA-- 162848 || |||||||||||| ||| || | || || || ||| ||| | ||| Sbjct 353 -----GCCACAAAGACATTGGGGAAGCAGGCTACGATGGCCCGCACAGCCTCTTGGAAGG 299 Query 162849 CATCGGGTCCGCTTTCCTATCTACGTGTACGCAGTATAGATTCTGAGGGGCGTAGATGGC 162908 || | || |||||| ||| | ||| |||||||| | ||||| |||||||||| || Sbjct 298 CAGCTGGGGA-CTTTCC-ATCAATGTGGACGCAGTAGACGTTCTGCGGGGCGTAGAGGGA 241 Query 162909 CCTCAGTAATCTCTCGAACATCTCTATCTTATGGTGTACCACGATAGAATACGCTATGGG 162968 || || | | ||| |||||||| || || | ||| | || || || || || ||||| Sbjct 240 CCGTAGGAGCCGCTCAAACATCTCGATTTTGTCGTGGATGACCATGGAGTAGGCGATGGG 181 Query 162969 GAACTCAGCCTCCTC 162983 ||||||||||||||| Sbjct 180 GAACTCAGCCTCCTC 166 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 577924512684800