Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colius_20striatus_20[refseq_20GCF_5F000690715.1_202014-05-13] 70,188 sequences; 1,075,931,597 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq30392 105 2e-17 seq25250 102 2e-16 >seq30392 Length=48271 Score = 105 bits (116), Expect = 2e-17 Identities = 147/206 (71%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| || || || || || || || ||||| |||||||| || |||| Sbjct 48057 CAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCTTGGAAGTCGAGCCCAGTGAC 47998 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || | || || ||| ||||| || || || ||||| ||| || ||| || Sbjct 47997 ACCATTGAGAATGTGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCTGACCAGCAG 47938 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 || || ||||| ||||| |||||| ||||||||||| | || || |||| |||||| || Sbjct 47937 AGGCTGATCTTTGCCGGGAAGCAGCTGGAAGATGGACGCACCCTGTCCGACTACAACATC 47878 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGT 206378 ||||| ||||| ||||| || ||||| Sbjct 47877 CAGAAGGAGTCCACTCTCCATCTTGT 47852 Score = 93.3 bits (102), Expect = 1e-13 Identities = 144/206 (70%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| || || || || || || || ||||| | || || || | |||| Sbjct 47829 CAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTCGAGGTTGAGCCTAGTGAC 47770 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || | || || ||| ||||| || || || ||||| ||| || ||| || Sbjct 47769 ACCATTGAGAATGTGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCTGACCAGCAG 47710 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 || || ||||| || || |||||| ||||||||||| | || || | || |||||| || Sbjct 47709 AGGCTGATCTTTGCTGGGAAGCAGCTGGAAGATGGACGCACCCTGTCTGACTACAACATC 47650 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGT 206378 ||||| ||||| ||||| |||||||| Sbjct 47649 CAGAAGGAGTCCACTCTCCACCTTGT 47624 Score = 86.0 bits (94), Expect = 1e-11 Identities = 70/85 (82%), Gaps = 0/85 (0%) Strand=Plus/Plus Query 204764 ACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTCCTTCCATCTTCC 204823 |||||||| ||||| ||||| ||||||| || ||||||| || || | |||||||||| Sbjct 47624 ACAAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGTCCATCTTCC 47683 Query 204824 AGCTGCTTTCCGGCGAAGATAAGCC 204848 |||||||| || || ||||| |||| Sbjct 47684 AGCTGCTTCCCAGCAAAGATCAGCC 47708 >seq25250 Length=4203 Score = 102 bits (112), Expect = 2e-16 Identities = 146/206 (71%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| || || || || || || || ||||| |||||||| || |||| Sbjct 3565 CAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCTTGGAAGTCGAGCCCAGTGAC 3506 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || | ||| || ||| ||||| || || ||||| || ||| || ||| || Sbjct 3505 ACCATAGAAAACGTCAAGGCCAAGATCCAGGACAAAGAGGGCATTCCCCCCGACCAGCAG 3446 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 || || |||||||| || || ||| ||||||||||| | || || | || |||||| || Sbjct 3445 AGGCTGATCTTCGCTGGCAAACAGCTGGAAGATGGACGCACCCTGTCTGACTACAACATC 3386 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGT 206378 ||||| ||||| ||||| || ||||| Sbjct 3385 CAGAAGGAGTCCACTCTCCATCTTGT 3360 Score = 93.3 bits (102), Expect = 1e-13 Identities = 152/216 (70%), Gaps = 5/216 (2%) Strand=Plus/Minus Query 206164 AAAATGTACCAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAA 206223 |||||| ||||| ||| || || || || || || || |||||| ||||||| || Sbjct 4027 AAAATG---CAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACTCTGGAAGTCGAG 3971 Query 206224 AGTTCTGACACAGTCGAATCAGT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCC 206282 ||| || |||| || ||||| || ||| ||||| ||||| || ||| || Sbjct 3970 CCCAGTGATACCATCGAGAATGTCAAAGCCAA-GATCCAAGACAAAGAGGGCATTCCCCC 3912 Query 206283 GGACGCTCAAAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGA 206342 ||| || || || |||||||| || || || ||||||| ||| | || || | || Sbjct 3911 CGACCAGCAGAGGCTGATCTTCGCTGGCAAACAACTGGAAGACGGACGCACCCTGTCTGA 3852 Query 206343 TTACAACGTCCAGAAAGAGTCTACTCTTCACCTTGT 206378 |||||| ||||||||||||| || || || ||||| Sbjct 3851 CTACAACATCCAGAAAGAGTCCACCCTCCATCTTGT 3816 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1180758007759148