Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colius_20striatus_20[refseq_20GCF_5F000690715.1_202014-05-13] 70,188 sequences; 1,075,931,597 total letters Query= NC_026141.2 Length=4988 Score E Sequences producing significant alignments: (Bits) Value seq465 123 8e-25 seq28919 109 2e-20 seq39147 107 6e-20 seq18251 98.7 3e-17 seq13924 98.7 3e-17 >seq465 Length=10045 Score = 123 bits (136), Expect = 8e-25 Identities = 71/73 (97%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 2768 GGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAAC 2827 |||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||| Sbjct 8537 GGCTGAAGTAGCTCAGCTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCAAC 8478 Query 2828 CCCGGGCTTCAGC 2840 ||||||||||||| Sbjct 8477 CCCGGGCTTCAGC 8465 >seq28919 Length=9529 Score = 109 bits (120), Expect = 2e-20 Identities = 68/73 (93%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 2768 GGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAAC 2827 |||||||||||||||| |||||||| ||||||||||||||||||||||||||||||| | Sbjct 3500 GGCTGAAGTAGCTCAGCTGGGAGAGTGTTAGACTGAAGATCTAAAGGTCCCTGGTTCAGC 3559 Query 2828 CCCGGGCTTCAGC 2840 || |||||||||| Sbjct 3560 CCTGGGCTTCAGC 3572 >seq39147 Length=13671 Score = 107 bits (118), Expect = 6e-20 Identities = 67/72 (93%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 |||||| |||||||||||||||||| |||||||||||||||||||||||||||||||| | Sbjct 5563 GCTGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCAATC 5622 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 5623 CCGGGTTTCGGC 5634 >seq18251 Length=17678 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 180 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 121 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 120 CCGGGTTTCGGC 109 >seq13924 Length=4628 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 918 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 859 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 858 CCGGGTTTCGGC 847 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 15837432559260