Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colius_20striatus_20[refseq_20GCF_5F000690715.1_202014-05-13] 70,188 sequences; 1,075,931,597 total letters Query= NC_026268.1 Length=139132 Score E Sequences producing significant alignments: (Bits) Value seq25250 84.2 2e-11 >seq25250 Length=4203 Score = 84.2 bits (92), Expect = 2e-11 Identities = 145/209 (69%), Gaps = 4/209 (2%) Strand=Plus/Minus Query 25172 AACATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCC 25231 || ||||| | ||||| || || | || || || | ||||| | |||||||| || Sbjct 4027 AAAATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACTCTGGAAGTCGAGCCC 3968 Query 25232 AACGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGAT 25291 | ||||| |||||| | || ||| || || || |||||||| || || ||||| Sbjct 3967 AGTGATACCATCGAGAATGTCAAAGCCAAGATCCAAGACAAAGAGGGCATTCCCCCCGAC 3908 Query 25292 CAGCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAA--ATGTCAGCGATT 25349 ||||| || || || | || ||||||||||| ||||| | | | |||| || | Sbjct 3907 CAGCAGAGGCTGATCTTCGCTGGCAAACAACTGGAAGACGGACGCACCCTGTC--TGACT 3850 Query 25350 ACAATATTCAAAAAGAATCCACCATTCAT 25378 |||| || || ||||| |||||| | ||| Sbjct 3849 ACAACATCCAGAAAGAGTCCACCCTCCAT 3821 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 444703896428160