Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colius_20striatus_20[refseq_20GCF_5F000690715.1_202014-05-13] 70,188 sequences; 1,075,931,597 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq46745 194 2e-43 seq6333 194 2e-43 seq19560 143 4e-28 seq18728 129 8e-24 seq51162 114 2e-19 seq54367 96.9 5e-14 seq52070 87.8 3e-11 seq46051 86.0 9e-11 >seq46745 Length=8286 Score = 194 bits (214), Expect = 2e-43 Identities = 181/229 (79%), Gaps = 6/229 (3%) Strand=Plus/Plus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||||||||| ||||||||||||||| |||| |||| || |||| ||||| Sbjct 212 TACAAGGTGCTGAAGCAGGTGCACCCCGACACCGG-----CATC-TCGTCCAAGGCCATG 265 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 ||||||||||| || ||||||||||| |||| ||||||| | ||||||| ||| Sbjct 266 GGCATCATGAACTCCTTCGTCAACGACATCTTCGAGCGCATCGCCGGCGAGGCCTCGCGC 325 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 ||||||| || |||||||||| ||| ||| |||| ||||||||||| |||||||| Sbjct 326 CTGGCGCACTACAACAAGCGCTCCACCATCACGTCGCGGGAGATCCAGACGGCCGTGCGG 385 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||| | ||| |||||| ||||||| ||||||||| ||||||||||||| Sbjct 386 CTGCTGCTGCCCGGCGAGCTGGCCAAGCACGCCGTGTCCGAGGGCACCA 434 Score = 168 bits (186), Expect = 1e-35 Identities = 175/229 (76%), Gaps = 13/229 (6%) Strand=Plus/Minus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||| ||||| ||||||||||||||| |||| |||| || |||| ||||| Sbjct 1651 TACAAAGTGCTGAAGCAGGTGCACCCCGATACCGG-----CATC-TCGTCCAAGGCCATG 1598 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 ||||||||||| || ||||||||||| |||| ||||||| | ||||||| ||| Sbjct 1597 GGCATCATGAACTCCTTCGTCAACGACATCTTCGAGCGCATCGCCGGCGAGGCCTCGCGC 1538 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 ||||||| || || |||||| | | | |||| ||||||||||| |||||||| Sbjct 1537 CTGGCGCACTACA-------CAACACAAGCCGGTCGCGGGAGATCCAGACGGCCGTGCGG 1485 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||| | ||| |||||| ||||||| ||||||||| ||||||||||||| Sbjct 1484 CTGCTGCTGCCCGGCGAGCTGGCCAAGCACGCCGTGTCCGAGGGCACCA 1436 >seq6333 Length=1021 Score = 194 bits (214), Expect = 2e-43 Identities = 181/229 (79%), Gaps = 6/229 (3%) Strand=Plus/Plus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||||||||| ||||||||||||||| |||| |||| || |||| ||||| Sbjct 587 TACAAGGTGCTGAAGCAGGTGCACCCCGATACCGG-----CATC-TCGTCCAAGGCCATG 640 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 ||||||||||| || ||||||||||| |||| ||||||| | ||||||| ||| Sbjct 641 AGCATCATGAACTCCTTCGTCAACGACATCTTCGAGCGCATCGCCGGCGAGGCCTCGCGC 700 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 ||||||| || |||||||||| ||| ||| |||| ||||||||||| |||||||| Sbjct 701 CTGGCGCACTACAACAAGCGCTCCACCATCACGTCGCGGGAGATCCAGACGGCCGTGCGG 760 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||| | ||| |||||| ||||||| ||||||||| ||||||||||||| Sbjct 761 CTGCTGCTGCCCGGCGAGCTGGCCAAGCACGCCGTGTCCGAGGGCACCA 809 >seq19560 Length=43182 Score = 143 bits (158), Expect = 4e-28 Identities = 180/244 (74%), Gaps = 6/244 (2%) Strand=Plus/Minus Query 724899 TACTCGTCCTTTATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCC 724958 ||||| || | ||||||||||||| |||||||| |||||| || ||| |||| Sbjct 28861 TACTCCATCTATGTCTACAAGGTGCTGAAGCAGGTCCACCCCGACAC---TGG--CATC- 28808 Query 724959 TCCAACAAGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGC 725018 || |||| ||||| ||||||||||| || ||||||||||| | || ||||| | Sbjct 28807 TCTTCCAAGGCCATGGGCATCATGAACTCCTTCGTCAACGACATCTTTGAGCGCATTGCT 28748 Query 725019 ACCGAGGCCGGTCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATC 725078 || || |||||||| | | |||||||||| || ||| | |||| |||||| Sbjct 28747 GGGGAAGCGTCCCGCCTGGCCCATTACAACAAGCGCTCAACCATCACCTCGCGGGAGATC 28688 Query 725079 CAGACCGCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGC 725138 ||||| |||||||||||| | | | || || ||||||| |||||| ||||| |||||| Sbjct 28687 CAGACGGCCGTGCGCCTGCTGCTCCCGGGAGAGCTGGCCAAGCACGCTGTCTCAGAGGGC 28628 Query 725139 ACCA 725142 |||| Sbjct 28627 ACCA 28624 >seq18728 Length=10059 Score = 129 bits (142), Expect = 8e-24 Identities = 163/229 (71%), Gaps = 30/229 (13%) Strand=Plus/Minus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||||||||| ||||||||||||||| |||| |||| || |||| ||||| Sbjct 9563 TACAAGGTGCTGAAGCAGGTGCACCCCGACACCGG-----CATC-TCGTCCAAGGCCATG 9510 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 ||||||||||| || ||||||||||| |||| | Sbjct 9509 GGCATCATGAACTCCTTCGTCAACGACATCTTCGAGC----------------------- 9473 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 |||||| || |||||||||| ||| ||| |||| ||||||||||| |||||||| Sbjct 9472 -TGGCGCCCTACAACAAGCGCCCCACCATCACGTCGCGGGAGATCCAGACGGCCGTGCGG 9414 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||| | ||| |||||| ||||||| ||||||||| ||||||||||||| Sbjct 9413 CTGCTGCTGCCCGGCGAGCTGGCCAAGCACGCCGTGTCCGAGGGCACCA 9365 >seq51162 Length=873 Score = 114 bits (126), Expect = 2e-19 Identities = 110/139 (79%), Gaps = 4/139 (3%) Strand=Plus/Plus Query 262091 CAGATCTGGTCGGCCATTGTCGCGGCCCATATCGAGACCGGCACGCCCTACATGGTCTAC 262150 ||| |||||| ||||| ||| | |||| | |||||| ||||| ||||||||| ||||| Sbjct 386 CAGCTCTGGTACGCCATCATCGAGTCCCAGACCGAGACTGGCACCCCCTACATGCTCTAC 445 Query 262151 AAGGACGCCGTCAACCTGACCAGCAACCAGCAGAACCTGGGCACCACGACAGAGGC--CA 262208 || ||| || |||| || |||||||||||||||||||| |||| || | || || Sbjct 446 AAAGACTCCTGCAACAGGAAGAGCAACCAGCAGAACCTGGGGACCA--TCAAATGCAGCA 503 Query 262209 ACCTGTGCACCGAGATCGT 262227 |||||||||| |||||||| Sbjct 504 ACCTGTGCACGGAGATCGT 522 >seq54367 Length=7739 Score = 96.9 bits (106), Expect = 5e-14 Identities = 91/115 (79%), Gaps = 1/115 (1%) Strand=Plus/Minus Query 1455715 CGAGCCGCTGCTGCGCGATAACCCGAACCGCTTTGTCCTGTTCCCCATCCGCTACCAGCG 1455774 ||| ||||||||||| || ||||| |||||||||| | ||||||||| ||||| Sbjct 7541 CGAACCGCTGCTGCGGGACAACCCTCGCCGCTTTGTCATCTTCCCCATCGAGTACCATGA 7482 Query 1455775 GATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGT 1455829 || ||| | ||||| ||| ||||||||||| ||||| ||||| || |||||||| Sbjct 7481 TATTTGGCAGATGTA-CAAGAAGGCCGAGGCTTCCTTCTGGACGGCGGAGGAGGT 7428 >seq52070 Length=3230 Score = 87.8 bits (96), Expect = 3e-11 Identities = 81/103 (79%), Gaps = 0/103 (0%) Strand=Plus/Minus Query 259970 TGCTTTCTGTTGGACATGAAGGCCGATTCGATCGAGGGCATCTATGACACGCTCAAGCAG 260029 || || ||| || |||||||| ||| || || |||||||||||||| ||||||||| Sbjct 2827 TGTTTCCTGCTGTGCATGAAGGACGACAGCATTGAAGGCATCTATGACACCCTCAAGCAG 2768 Query 260030 TGCGCGCTCATCTCCAAGGCGGCCGGCGGCATCGGTTTTGCCG 260072 || || |||||||||||| | || || |||||||| | |||| Sbjct 2767 TGTGCCCTCATCTCCAAGTCTGCTGGGGGCATCGGCCTCGCCG 2725 >seq46051 Length=1320 Score = 86.0 bits (94), Expect = 9e-11 Identities = 64/75 (85%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 725068 CGCGCGAGATCCAGACCGCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCG 725127 |||| ||||||||||| |||||| | ||| | ||| |||||| ||||||| |||||||| Sbjct 603 CGCGGGAGATCCAGACGGCCGTGAGGCTGCTGCTGCCCGGCGAGCTGGCCAAGCACGCCG 544 Query 725128 TCTCCGAGGGCACCA 725142 | ||||||||||||| Sbjct 543 TGTCCGAGGGCACCA 529 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7171041438394456