Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colius_20striatus_20[refseq_20GCF_5F000690715.1_202014-05-13] 70,188 sequences; 1,075,931,597 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq30392 96.9 3e-15 seq25250 95.1 1e-14 >seq30392 Length=48271 Score = 96.9 bits (106), Expect = 3e-15 Identities = 107/143 (75%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || || || |||| ||| || || || ||||| ||||| || ||||||||||| Sbjct 48062 CCACCCCTCAGGCGCAGCACAAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAC 48121 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | |||| | ||| || ||||| || || ||||| |||| | |||||| || || || Sbjct 48122 AGGGTGCGTCCGTCCTCCAGCTGCTTCCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGA 48181 Query 134607 ATGCCTTCTTTTTCTTGAATTTT 134629 |||||||| || ||||||||||| Sbjct 48182 ATGCCTTCCTTGTCTTGAATTTT 48204 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || || || |||| ||| ||||| || ||||| ||||| || ||||||||||| Sbjct 47606 CCACCCCTCAGGCGCAGCACAAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAC 47665 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | |||| | || || ||||| || || ||||| |||| | |||||| || || || Sbjct 47666 AGGGTGCGTCCATCTTCCAGCTGCTTCCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGA 47725 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 |||||||| || || || || || || || || | ||||| | || || Sbjct 47726 ATGCCTTCCTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTAGGCTCAACC 47785 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 ||||| || ||||| || || || | || || || || || ||||| Sbjct 47786 TCGAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 47832 Score = 82.4 bits (90), Expect = 8e-11 Identities = 104/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || || || |||| ||| || || || ||||| ||||| || |||||||||||| Sbjct 47834 CCACCCCTCAGGCGCAGCACAAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAC 47893 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | |||| | || || ||||| || || ||||| |||| | |||||| || || || Sbjct 47894 AGGGTGCGTCCATCTTCCAGCTGCTTCCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGA 47953 Query 134607 ATGCCTTCTTTTTCTTGAATTTT 134629 |||||||| || || || || || Sbjct 47954 ATGCCTTCCTTGTCCTGGATCTT 47976 >seq25250 Length=4203 Score = 95.1 bits (104), Expect = 1e-14 Identities = 160/232 (69%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 134485 TTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGC 134544 |||| || | || |||| || || || || ||||| || || || ||||||||||| Sbjct 3796 TTCCACCCCGCAGGCGCAGGACAAGATGGAGGGTGGACTCTTTCTGGATGTTGTAGTCAG 3855 Query 134545 CAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCG 134604 | |||| | ||| || || |||||||| || || |||| | |||||| ||||| | Sbjct 3856 ACAGGGTGCGTCCGTCTTCCAGTTGTTTGCCAGCGAAGATCAGCCTCTGCTGGTCGGGGG 3915 Query 134605 GTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCA 134664 | ||||| ||||| ||||| || || |||||| || | || || | || | Sbjct 3916 GAATGCCCTCTTTGTCTTGGATCTTGGCTTTGACATTCTCGATGGTATCACTGGGCTCGA 3975 Query 134665 CGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTT 134716 | || ||||| ||||| || || || | || || || || || |||||||| Sbjct 3976 CTTCCAGAGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATTTT 4027 Score = 91.5 bits (100), Expect = 1e-13 Identities = 107/145 (74%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 134485 TTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGC 134544 |||| || || || |||| ||| || || || ||||| ||||| || ||||||||||| Sbjct 3340 TTCCACCCCTCAGGCGCAGCACAAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAG 3399 Query 134545 CAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCG 134604 | |||| | || || ||||||||||| || || |||| | |||||| ||||| | Sbjct 3400 ACAGGGTGCGTCCATCTTCCAGCTGTTTGCCAGCGAAGATCAGCCTCTGCTGGTCGGGGG 3459 Query 134605 GTATGCCTTCTTTTTCTTGAATTTT 134629 | ||||| ||||| || || || || Sbjct 3460 GAATGCCCTCTTTGTCCTGGATCTT 3484 Score = 86.0 bits (94), Expect = 6e-12 Identities = 106/145 (73%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 134485 TTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGC 134544 |||| || || || || | || || || || || ||||||||||| ||||||||||| Sbjct 3568 TTCCACCCCTCAGGCGTAGGACAAGATGCAGAGTAGATTCCTTTTGGATGTTGTAGTCAG 3627 Query 134545 CAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCG 134604 | |||| | ||| || || |||||||| ||||| |||| | ||||||||| || | Sbjct 3628 ACAGGGTGCGTCCGTCTTCCAGTTGTTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGG 3687 Query 134605 GTATGCCTTCTTTTTCTTGAATTTT 134629 | ||||| || || || || || || Sbjct 3688 GAATGCCCTCCTTGTCCTGGATCTT 3712 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 504954988713760