Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colius_20striatus_20[refseq_20GCF_5F000690715.1_202014-05-13] 70,188 sequences; 1,075,931,597 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq54367 100 2e-16 seq22784 87.8 1e-12 >seq54367 Length=7739 Score = 100 bits (110), Expect = 2e-16 Identities = 87/108 (81%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 43913 CAAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAAT 43972 |||||||| ||| | ||||||| || ||||| ||||| || || |||||||| ||||| Sbjct 6299 CAAGAAGTACAAGTCACAGAAGCTCGTTGTTTCTATGGCTTCCAGATTGCCATGGAAAAC 6240 Query 43973 ATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGAT 44020 || ||||| ||||||||||| || || || || || ||||| |||||| Sbjct 6239 ATACATTCAGAAATGTACAGCCTCCTTATTGACACCTACATTAAAGAT 6192 >seq22784 Length=40504 Score = 87.8 bits (96), Expect = 1e-12 Identities = 75/93 (81%), Gaps = 0/93 (0%) Strand=Plus/Minus Query 43928 CCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATG 43987 |||||||| || ||||| ||||| ||||| || ||| || ||| |||| || || ||| Sbjct 35608 CCAGAAGCTCGCTGTTTCTATGGCTTTCAGATCCTCATTGAGAATGTTCACTCAGAGATG 35549 Query 43988 TACAGTCTTCTGATAGATACGTACATCAAAGAT 44020 ||||| || |||||||| || |||||||||||| Sbjct 35548 TACAGCCTGCTGATAGACACTTACATCAAAGAT 35516 Score = 86.0 bits (94), Expect = 5e-12 Identities = 101/136 (74%), Gaps = 3/136 (2%) Strand=Plus/Minus Query 44493 AAAACCCGTTTGATTTTATGGAAAATATTTCGTTGGAAGGCAAAACAAACTTTTTTGAAA 44552 |||| || |||||||||||||| |||||||| ||||||| |||||||| || ||||| | Sbjct 25635 AAAATCCTTTTGATTTTATGGAGAATATTTCTCTGGAAGGAAAAACAAATTTCTTTGAGA 25576 Query 44553 AACGCGTTGGAGAATATCAGCGAATGGGCGTCATG---ATAACAAGTGACAATAAATTTA 44609 | || ||| |||||| ||||| | | || ||| ||| | |||||| || | Sbjct 25575 AGCGGGTTTCAGAATACCAGCGTTTTGCTGTTATGGCAGAAACGATGGACAATGTCTTCA 25516 Query 44610 CTACGGATGAAGATTT 44625 || ||||| |||||| Sbjct 25515 CTCTGGATGCAGATTT 25500 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397116009678940