Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colius_20striatus_20[refseq_20GCF_5F000690715.1_202014-05-13] 70,188 sequences; 1,075,931,597 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq51162 91.5 2e-13 seq54367 86.0 8e-12 >seq51162 Length=873 Score = 91.5 bits (100), Expect = 2e-13 Identities = 112/153 (73%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 111265 CTCATCCTTATCTGTGTACTCTAAAATTTCTGTACATAAGTTGGAACTCTTAATCGTCCC 111324 ||||||||| |||||||| | || || || || | |||| | || || ||||| Sbjct 544 CTCATCCTTGCTGGTGTACTCCACGATCTCCGTGCACAGGTTGCTGCATTTGATGGTCCC 485 Query 111325 CAAATTCTTTTGGTTACTCTTCTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCC 111384 || |||| ||||| |||||| ||||||| | || ||||||||||||||||| || || Sbjct 484 CAGGTTCTGCTGGTTGCTCTTCCTGTTGCAGGAGTCTTTGTAGAGCATGTAGGGGGTGCC 425 Query 111385 CGTCTCCGTCTGTGATTTGAGAATAGCCTTCCA 111417 ||||| ||||| || | || || || | ||| Sbjct 424 AGTCTCGGTCTGGGACTCGATGATGGCGTACCA 392 >seq54367 Length=7739 Score = 86.0 bits (94), Expect = 8e-12 Identities = 65/77 (84%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 122370 ATAGTCCCCGACCCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCAT 122429 ||| || || || |||||||||||||||||||||||||| || || ||||||||||| Sbjct 2334 ATATTCACCTACTCGCTTCTCAAAGAAGTTGGTCTTCCCTTCCAGAGAGATGTTTTCCAT 2393 Query 122430 AAAGTCAAATGGATTCT 122446 |||||||| ||||||| Sbjct 2394 GAAGTCAAAAGGATTCT 2410 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627480996124800