Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colius_20striatus_20[refseq_20GCF_5F000690715.1_202014-05-13] 70,188 sequences; 1,075,931,597 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq25250 152 2e-31 seq38878 147 7e-30 seq30392 140 1e-27 seq20714 116 1e-20 seq49848 89.7 2e-12 seq54367 84.2 7e-11 >seq25250 Length=4203 Score = 152 bits (168), Expect = 2e-31 Identities = 173/232 (75%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 ||| ||||| | | | ||| |||||||| |||||||| || ||||| || || || || Sbjct 3566 CATTCCACCCCTCAGGCGTAGGACAAGATGCAGAGTAGATTCCTTTTGGATGTTGTAGTC 3625 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 ||| | || || || ||||| |||||||| ||||||||||| || | ||||||||||| Sbjct 3626 AGACAGGGTGCGTCCGTCTTCCAGTTGTTTGCCAGCAAAGATCAGCCTCTGCTGATCAGG 3685 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 ||||| || || || ||||| || || || || || || ||||| | |||| || || Sbjct 3686 GGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCAATGGTATCACTGGGCTC 3745 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCATT 140738 ||||| | || | ||||| || || || || || ||||| ||||||||| Sbjct 3746 GACTTCCAAGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATT 3797 Score = 150 bits (166), Expect = 5e-31 Identities = 161/213 (76%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 140526 AGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCT 140585 || |||||||| |||||||| || ||||| || || || ||||| | || || || ||| Sbjct 3129 AGGACAAGATGCAGAGTAGATTCCTTTTGGATGTTGTAGTCAGACAGGGTACGTCCGTCT 3188 Query 140586 TCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCC 140645 || |||||||| ||||| ||||| || | ||||||||||| ||||| || || || ||| Sbjct 3189 TCCAGTTGTTTGCCAGCGAAGATCAGCCTCTGCTGATCAGGGGGAATGCCCTCCTTGTCC 3248 Query 140646 TGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTC 140705 || || || || || ||||| ||||| | |||| || || ||||| | || | ||| Sbjct 3249 TGGATCTTGGCCTTGACATTCTCAATGGTATCACTGGGCTCGACTTCCAAGGTGATGGTC 3308 Query 140706 TTTCCGGTTAGTGTTTTTACAAAAATCTGCATT 140738 || || || || || || ||||| ||||||||| Sbjct 3309 TTGCCAGTCAGGGTCTTCACAAAGATCTGCATT 3341 >seq38878 Length=13300 Score = 147 bits (162), Expect = 7e-30 Identities = 565/879 (64%), Gaps = 20/879 (2%) Strand=Plus/Plus Query 349562 AAAATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACTGATGCTGTTATTACT 349621 || |||||||| || ||||| || ||| | || | || ||||||| || || Sbjct 465 AAGATGAAGGAGATCGCTGAGGCTTATCTGGGGCGCAAGGTGCAGAATGCTGTCATCACC 524 Query 349622 GTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGCATTGCG 349681 || || || || || ||||| ||||||| || || ||||||||||||| ||| | Sbjct 525 GTGCCTGCTTACTTCAATGACTCCCAGCGCCAGGCCACCAAAGATGCTGGCACCATCACT 584 Query 349682 GGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATATGGGCTT 349741 || | || || | | || || || || ||||| || ||||| || || ||||| | Sbjct 585 GGCCTTAACGTGATGCGTATTATCAACGAGCCCACGGCAGCAGCCATAGCCTATGGCTTG 644 Query 349742 GATAAAATGAGTGACCA------AGaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGGT 349795 || || | || || ||| || || | || || ||||| | || || || Sbjct 645 GACAAGAAAGGTACCCGGGCAGGAGAGAAGAACGTGCTCATCTTTGACCTGGGAGGGGGC 704 Query 349796 ACTTTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTGCT 349855 ||||||||||| || | || || |||| || || || ||||| || || | || ||| Sbjct 705 ACTTTTGATGTTTCTATCCTTACCATTGAGGATGGTATCTTTGAGGTGAAGTCCACAGCT 764 Query 349856 GGTGATACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGTTTCGCATTTTGTTAAA 349915 || || || || || ||||| || || ||||| || || | || ||||| || || Sbjct 765 GGAGACACCCACCTGGGTGGGGAGGACTTTGACAACCGCATGGTGAACCATTTCGTGGAA 824 Query 349916 GAATTTAAGCGTCAAGC-TAAAATTGATAT---TGGAGATAATCCTAGAGCAATGCGTCG 349971 ||||| ||||| ||||| || || || ||| | || | |||| || | || Sbjct 825 GAATTCAAGCG-CAAGCACAAGCGCGACATCGCTGGCAACAAGC---GAGCGGTGAGGCG 880 Query 349972 CCTAAGAACTGCGTGTGAACGTGCTAAGCGTTCCTTATCATCTACT--ACCCAAACCTCT 350029 || | || || ||||| | || ||||| | | ||| || || || ||| || Sbjct 881 GCTGCGCACGGCTTGTGAGAGGGCGAAGCG--CACTCTCAGCTCCTCCACGCAAGCCAGC 938 Query 350030 ATTGAAATTGATTCTCTTGCTGATGGCAAAGATTTCTTTTCATCTATTACACGTGCTCGG 350089 ||||| || || || || ||| |||| || |||| | || ||||| ||||| || Sbjct 939 ATTGAGATCGACTCCCTCTATGAGGGCATTGACTTCTACACCTCCATTACTCGTGCCCGC 998 Query 350090 TTTGAAGAATTATGTATGGATCTTTTTAGAGCAACAATGGATCCTGTGGAAAAAGTATTA 350149 ||||| || | | || || || | | || |||| || ||||| || | | Sbjct 999 TTTGAGGAGCTCAATGCTGACCTCTTCCGTGGCACCTTGGAGCCGGTGGAGAAGGCTCTG 1058 Query 350150 AAAGATGCAAAAATGTCCAAAAATCAGATTGATGAAGTAGTTTTAGTTGGTGGTTCTACA 350209 ||||| || | ||| || || | || | || | || ||||| ||||| Sbjct 1059 CGCGATGCCAAGCTAGACAAGGGCCAAATCCAGGAGATCGTGCTGGTGGGTGGCTCTACC 1118 Query 350210 CGTATTCCAAAAGTTCAACAGTTACTATCTGAGTTTTTTAATGGCAAAGAAC-CTTCTAG 350268 ||||| || || | ||| || ||||| || || || ||||||||||| | | | || Sbjct 1119 CGTATCCCCAAGATCCAAAAGCTACTACAGGACTTCTTCAATGGCAAAGAGCTCAACAAG 1178 Query 350269 ATCAATTAATCCAGATGAAGCTGTTGCATATGGTGCTGCTGTTCAGGCATCTATTTTATC 350328 | | || || || ||||| || ||||| || ||||| ||||| || || |||| | Sbjct 1179 AGC-ATCAACCCTGATGAGGCCGTTGCTTACGGTGCCGCTGTGCAAGCGGCTATCCTCAT 1237 Query 350329 TGGAAATAAGAGTTCTAAAATTGATGATCTATTACTACTAGATGTAACTCCACTTTCGCT 350388 ||| | ||| | || | | ||||| || || | ||||| || || || || || Sbjct 1238 GGGAGACAAGTCTGAGAACGTGCAGGATCTGTTGCTGTTGGATGTCACCCCTCTGTCCCT 1297 Query 350389 TGGATTAGAAACTTCTGGTGAAGTAATGACTGTTCTTAT 350427 || | || || | |||| ||| ||||| | ||| || Sbjct 1298 GGGCATCGAGACGGCCGGTGGAGTGATGACAGCTCTCAT 1336 >seq30392 Length=48271 Score = 140 bits (154), Expect = 1e-27 Identities = 158/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 140526 AGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCT 140585 || ||||| || ||||| ||||| || || || || || ||||| | || || |||||| Sbjct 47621 AGCACAAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGTCCATCT 47680 Query 140586 TCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCC 140645 || || || || ||||||||||| || | ||||| ||||| ||||| ||||| || ||| Sbjct 47681 TCCAGCTGCTTCCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTGTCC 47740 Query 140646 TGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTC 140705 || || || || || ||||| ||||| | ||| || ||||| || || || | ||| Sbjct 47741 TGGATCTTGGCCTTCACATTCTCAATGGTGTCACTAGGCTCAACCTCGAGGGTGATGGTC 47800 Query 140706 TTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || || || || || || ||||| |||||||| Sbjct 47801 TTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 47832 Score = 129 bits (142), Expect = 2e-24 Identities = 145/194 (75%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 140526 AGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCT 140585 || |||||||| ||||| ||||| || || || || || ||||| | || || || || Sbjct 48077 AGCACAAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGTCCGTCC 48136 Query 140586 TCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCC 140645 || || || || ||||||||||| || | ||||| ||||| ||||| ||||| || || Sbjct 48137 TCCAGCTGCTTCCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTGTCT 48196 Query 140646 TGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTC 140705 ||||||||||| || ||||| ||||| | ||| || ||||| ||||| || | ||| Sbjct 48197 TGAATTTTAGCCTTCACATTCTCAATGGTGTCACTGGGCTCAACCTCAAGAGTGATGGTC 48256 Query 140706 TTTCCGGTTAGTGT 140719 || || || || || Sbjct 48257 TTGCCAGTCAGGGT 48270 >seq20714 Length=3824 Score = 116 bits (128), Expect = 1e-20 Identities = 350/535 (65%), Gaps = 4/535 (1%) Strand=Plus/Plus Query 349772 CTTATTTTTGATTTAGGTGGTGGTACTTTTGATGTATCACTACTAACACTTGAAGAGGGA 349831 || || ||||| | || ||||| || || ||||| || | || ||| ||||||| || Sbjct 880 CTCATCTTTGACCTCGGAGGTGGCACCTTCGATGTGTCCATCCTGACAATTGAAGATGGC 939 Query 349832 ATTTTTGAAGTTAAAGCAACTGCTGGTGATACACATCTTGGTGGAGAAGATTTTGATAAT 349891 || |||||||| ||| | || || ||||| || || | ||||||||||| ||||| || Sbjct 940 ATCTTTGAAGTGAAATCCACAGCAGGTGACACTCACTTGGGTGGAGAAGACTTTGACAAC 999 Query 349892 CGTCTCGTTTCGCATTTTGTTAAAGAATTTAAGCGTCAAGC-TAAAATTGATATTGGAGA 349950 ||| | || || || | ||||| ||||| ||||| || | || || | || Sbjct 1000 CGTATGGTGAACCACTTCATCGCTGAATTCAAGCG-CAAGCACAAGAAGGACATCAGTGA 1058 Query 349951 TAATCCTAGAGCAATGCGTCGCCTAAGAACTGCGTGTGAACGTGCTAAGCGTTCCTTATC 350010 || || ||| |||| || || | || || || || ||||| ||||| || | || Sbjct 1059 GAACAAGAGGGCAGTGCGCCGGCTCCGCACGGCCTGCGAGCGTGCCAAGCGCACCCTGTC 1118 Query 350011 ATCTACTACCCAAACCTCTATTGAAATTGATTCTCTTGCTGATGGCAAAGATTTCTTTTC 350070 || | || || || ||||| ||||| ||||| || |||| || |||| | Sbjct 1119 CTCCAGCACGCAGGCCAGCATTGAGATTGACTCTCTGTACGAGGGCATTGACTTCTACAC 1178 Query 350071 ATCTATTACACGTGCTCGGTTTGAAGAATTATGTATGGATCTTTTTAGAGCAACAATGGA 350130 || || || | ||||| || || || | || || || | | || |||| Sbjct 1179 GTCCATCACCAGAGCTCGCTTCGAGGAGCTCAACGCTGACCTGTTCCGTGGCACCCTGGA 1238 Query 350131 TCCTGTGGAAAAAGTATTAAAAGATGCAAAAATGTCCAAAAATCAGATTGATGAAGTAGT 350190 ||||||||| || | | || || || | ||| ||||| | || | || Sbjct 1239 TCCTGTGGAGAAGGCGCTGCGGGACGCCAAGCTCGACAAGTCGCAGATCCACGACATCGT 1298 Query 350191 TTTAGTTGGTGGTTCTACACGTATTCCAAAAGTTCAACAGTTACTATCTGAGTTTTTTAA 350250 | || ||||| ||||| ||||| ||||| |||| || | || || || || || Sbjct 1299 CCTGGTGGGTGGCTCTACTCGTATCCCAAAGATTCAGAAGCTGCTGCAGGACTTCTTCAA 1358 Query 350251 TGGCAAAGAAC-CTTCTAGATCAATTAATCCAGATGAAGCTGTTGCATATGGTGC 350304 ||||||||| | | ||| | || ||||| |||||||| || || |||||||| Sbjct 1359 TGGCAAAGAGCTGAACAAGAGC-ATCAATCCTGATGAAGCCGTGGCTTATGGTGC 1412 Score = 102 bits (112), Expect = 2e-16 Identities = 112/149 (75%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 349598 ACAGTAACTGATGCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCA 349657 || || ||| | ||||| | ||||||||||||||||| || || | |||||| || Sbjct 615 ACTGTTACTAACGCTGTGGTGACTGTACCAGCCTATTTCAACGACTCTCAGCGTCAGGCC 674 Query 349658 ACAAAAGATGCTGGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACT 349717 || ||||||||||| | |||||| ||| | ||||| || |||| || ||||| || || Sbjct 675 ACGAAAGATGCTGGAACCATTGCAGGGCTCAATGTGCTGCGAATTATCAATGAGCCAACA 734 Query 349718 GCTGCAGCAATTGCATATGGGCTTGATAA 349746 ||||| || || || ||||| || || || Sbjct 735 GCTGCTGCCATAGCCTATGGTCTGGACAA 763 >seq49848 Length=6199 Score = 89.7 bits (98), Expect = 2e-12 Identities = 125/173 (72%), Gaps = 3/173 (2%) Strand=Plus/Plus Query 349715 ACTGCTGCAGCAATTGCATATGGGCTTGATAAAATGAGTGACCAAGaaaaaaaTATTCTT 349774 || ||||| || ||||| || || || || || | ||| | | ||||| || || || Sbjct 1175 ACAGCTGCTGCCATTGCCTACGGACTGGACAAGA-GAGAGGGC--GAAAAGAACATCCTG 1231 Query 349775 ATTTTTGATTTAGGTGGTGGTACTTTTGATGTATCACTACTAACACTTGAAGAGGGAATT 349834 | || || || ||||| || ||||||||||| || || || ||| |||| | ||| | Sbjct 1232 GTGTTCGACTTGGGTGGGGGAACTTTTGATGTCTCTCTCCTCACAATTGACAACGGAGTC 1291 Query 349835 TTTGAAGTTAAAGCAACTGCTGGTGATACACATCTTGGTGGAGAAGATTTTGA 349887 |||||||| ||||| |||||| || || || ||||||||||| ||||| Sbjct 1292 TTTGAAGTAGTGGCAACCAATGGTGACACTCACCTGGGTGGAGAAGACTTTGA 1344 >seq54367 Length=7739 Score = 84.2 bits (92), Expect = 7e-11 Identities = 96/129 (74%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 223719 ATGCCTCATCTCTTGATATTAATTCATTTGAAAATGTTAATCCAGGCATTAAACCTCTCT 223778 || |||| ||||| || | |||||| ||||| || | |||||||||||| ||||| | Sbjct 4164 ATACCTCGTCTCTACTGATGAGTTCATTAGAAAAAGTGAGTCCAGGCATTAATCCTCTTT 4223 Query 223779 TTTTCATCCAAAATATTGCGCAAAAAGCTCCTGaaaaaaaTATACCTTCTACACAAGCAA 223838 | |||| |||||| |||| ||||| || ||||| || || ||||| || |||| Sbjct 4224 TCTTCAGCCAAAAAATTGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCCACGGCTGCAA 4283 Query 223839 ACGCTACTA 223847 | ||||||| Sbjct 4284 AAGCTACTA 4292 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1513891756340964