Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colius_20striatus_20[refseq_20GCF_5F000690715.1_202014-05-13] 70,188 sequences; 1,075,931,597 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq52070 87.8 2e-12 seq54367 82.4 8e-11 >seq52070 Length=3230 Score = 87.8 bits (96), Expect = 2e-12 Identities = 78/98 (80%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 19253 AGCTGTTTCCTAGTGGCTATGAAGGATGACAGCATTGAGGGCATCTACGAGACGCTCAAG 19312 || |||||||| || |||||||| ||||||||||| |||||||| || || |||||| Sbjct 2830 AGTTGTTTCCTGCTGTGCATGAAGGACGACAGCATTGAAGGCATCTATGACACCCTCAAG 2771 Query 19313 GAGTGCGCGCACATCTCCAAGTGGTCCGGGGGTATCGG 19350 |||| || | ||||||||||| | ||||| ||||| Sbjct 2770 CAGTGTGCCCTCATCTCCAAGTCTGCTGGGGGCATCGG 2733 >seq54367 Length=7739 Score = 82.4 bits (90), Expect = 8e-11 Identities = 63/75 (84%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 60345 AACCCTTTCGACTGGATGGAGACCATCTCGTTGGAAGGGAAGACCAACTTCTTTGAGAAG 60404 || ||||| |||| ||||| | |||||| ||||||||||||||||||||||||||||| Sbjct 2408 AATCCTTTTGACTTCATGGAAAACATCTCTCTGGAAGGGAAGACCAACTTCTTTGAGAAG 2349 Query 60405 CGGGTCGGGGATTAT 60419 || || || || ||| Sbjct 2348 CGAGTAGGTGAATAT 2334 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548043551766720