Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colius_20striatus_20[refseq_20GCF_5F000690715.1_202014-05-13] 70,188 sequences; 1,075,931,597 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq51350 91.5 2e-13 seq44013 89.7 6e-13 seq54367 87.8 2e-12 seq22784 86.0 7e-12 >seq51350 Length=39487 Score = 91.5 bits (100), Expect = 2e-13 Identities = 95/125 (76%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364 |||||||| ||||||| ||| |||||||| || |||||| ||| | ||||| || || Sbjct 30473 GTGAAAATATAACGAGGGCTGGCAGCATCTTTTCCACCATGAAGCCTGGTACCAAACTGA 30414 Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424 ||| | || | | || || | |||||| || |||||||| ||||||||||||||| Sbjct 30413 CCAATAGGTTGGAGCAGATTAACGTTGTTACTTCCAACAAAGTTCTGAGCCAAGTTGACA 30354 Query 117425 ATCGT 117429 || || Sbjct 30353 ATAGT 30349 >seq44013 Length=4345 Score = 89.7 bits (98), Expect = 6e-13 Identities = 88/114 (77%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 55492 CCTGCTCGTGGCGCCAATGCCAACCGCGTCGACGGCTCAGATCATGGGCAACAACGAGGC 55551 ||| ||| || | || |||||||| || || || ||||||||| |||||||||||||| | Sbjct 3063 CCTCCTCCTGTCTCCCATGCCAACGGCTTCCACTGCTCAGATCCTGGGCAACAACGAGTC 3004 Query 55552 GTTCGAGCCGTACACGACCAACATCTACCTGCGCCGGACCCTAGCAGGTGAGTT 55605 ||||||| ||||| | |||||||||| ||| | ||| |||| ||||| Sbjct 3003 CATCGAGCCCTACACCAGCAACATCTACACACGCAGAGTCCTCTCAGGGGAGTT 2950 >seq54367 Length=7739 Score = 87.8 bits (96), Expect = 2e-12 Identities = 68/81 (84%), Gaps = 0/81 (0%) Strand=Plus/Plus Query 74462 ATAATCACCGACCCGCTTTTCAAAAAAGTTGGTCTTCCCTTCCAACGAGATGTTCTCCAT 74521 ||| ||||| || ||||| ||||| ||||||||||||||||||| |||||||| ||||| Sbjct 2334 ATATTCACCTACTCGCTTCTCAAAGAAGTTGGTCTTCCCTTCCAGAGAGATGTTTTCCAT 2393 Query 74522 CCAGTCGAAAGGGTTCTTTGC 74542 |||| ||||| |||| ||| Sbjct 2394 GAAGTCAAAAGGATTCTCTGC 2414 >seq22784 Length=40504 Score = 86.0 bits (94), Expect = 7e-12 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 74772 TCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTCTTC 74831 ||||||||||| || | ||||| || || | || |||||||| || || | ||||||| Sbjct 31404 TCATCTCTGCTAATAAGCTCATTGGAGAAAGTCAGTCCAGGCATCAGGCCCCTCTTCTTC 31463 Query 74832 AACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAGGCG 74891 | |||||| || ||| |||||||| |||||||||||||| || |||||||| Sbjct 31464 AGCCAAAATATAGCAGCAAAGGAACCCGAAAAGAAGATGCCTTCAACTGCAGCAAAGGCA 31523 Query 74892 AC 74893 || Sbjct 31524 AC 31525 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 546735900042400