Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colius_20striatus_20[refseq_20GCF_5F000690715.1_202014-05-13] 70,188 sequences; 1,075,931,597 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq30392 176 5e-39 seq25250 172 6e-38 >seq30392 Length=48271 Score = 176 bits (194), Expect = 5e-39 Identities = 175/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||| ||||| || || |||||||| || || || ||||||||| | || Sbjct 47832 ATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTCGAGGTTGAGCCTAGT 47773 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| ||| ||||||| || || ||||||||||| || ||||| || |||||| Sbjct 47772 GACACCATTGAGAATGTGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCTGACCAG 47713 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | || || |||||||| ||||| || || |||| || ||||| | ||||| || Sbjct 47712 CAGAGGCTGATCTTTGCTGGGAAGCAGCTGGAAGATGGACGCACCCTGTCTGACTACAAC 47653 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| |||||||| || || || |||| || | ||||| Sbjct 47652 ATCCAGAAGGAGTCCACTCTCCACCTTGTGCTGCGCCTGAGGGGTGG 47606 Score = 176 bits (194), Expect = 5e-39 Identities = 165/210 (79%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 27423 GACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTT 27482 ||| || || |||||||| || ||||||||||||||| | |||| | ||||| ||| | Sbjct 48271 GACCCTGACTGGCAAGACCATCACTCTTGAGGTTGAGCCCAGTGACACCATTGAGAATGT 48212 Query 27483 GAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGC 27542 ||||||||||||||| |||||||| || ||||| || ||||||||| | || || ||||| Sbjct 48211 GAAGGCTAAAATTCAAGACAAGGAAGGCATTCCCCCTGACCAGCAGAGGCTGATCTTTGC 48152 Query 27543 TGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCAC 27602 ||| ||||| || ||||| | || ||||| | ||||| || |||| ||||| ||||| Sbjct 48151 TGGGAAGCAGCTGGAGGACGGACGCACCCTGTCTGACTACAACATCCAGAAGGAGTCCAC 48092 Query 27603 TCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 ||| ||||| || |||| || | ||||| Sbjct 48091 TCTCCATCTTGTGCTGCGCCTGAGGGGTGG 48062 Score = 161 bits (178), Expect = 1e-34 Identities = 172/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||| ||||| || || |||||||| || || | || || ||| | || Sbjct 48060 ATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCTTGGAAGTCGAGCCCAGT 48001 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| ||| ||||||| || || ||||||||||| || ||||| || |||||| Sbjct 48000 GACACCATTGAGAATGTGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCTGACCAG 47941 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | || || ||||| || ||||| || || |||| || ||||| | ||||| || Sbjct 47940 CAGAGGCTGATCTTTGCCGGGAAGCAGCTGGAAGATGGACGCACCCTGTCCGACTACAAC 47881 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| |||||||| ||||| || |||| || | ||||| Sbjct 47880 ATCCAGAAGGAGTCCACTCTCCATCTTGTGCTGCGCCTGAGGGGTGG 47834 >seq25250 Length=4203 Score = 172 bits (190), Expect = 6e-38 Identities = 175/228 (77%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| |||||||| ||||| || || |||||||| || || | || || ||| | | Sbjct 3341 AATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCTTGGAAGTCGAGCCCAG 3282 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 ||||| ||||| ||| | ||||| || || |||||||||||||| ||||| || || || Sbjct 3281 TGATACCATTGAGAATGTCAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCTGATCA 3222 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 |||| | || || || ||||| || ||||| || || | |||||||| | ||||| || Sbjct 3221 GCAGAGGCTGATCTTCGCTGGCAAACAACTGGAAGACGGACGTACCCTGTCTGACTACAA 3162 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 ||||||||||||| ||||| ||||| ||| |||| || | ||||| Sbjct 3161 CATCCAAAAGGAATCTACTCTGCATCTTGTCCTGCGCCTGAGGGGTGG 3114 Score = 165 bits (182), Expect = 9e-36 Identities = 174/229 (76%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| |||||||| ||||| || || |||||||| || || | || || ||| | | Sbjct 3797 AATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCTTGGAAGTCGAGCCCAG 3738 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 ||||| ||||| || | ||||| || || |||||||||||||| ||||| || || || Sbjct 3737 TGATACCATTGAGAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCTGATCA 3678 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 |||| | || || |||||||| || ||||| || || | || ||||| | ||||| || Sbjct 3677 GCAGAGGCTGATCTTTGCTGGCAAACAACTGGAAGACGGACGCACCCTGTCTGACTACAA 3618 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGA 27633 ||||||||||||| ||||| ||||| ||| | || || | |||||| Sbjct 3617 CATCCAAAAGGAATCTACTCTGCATCTTGTCCTACGCCTGAGGGGTGGA 3569 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 569810038170560