Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colius_20striatus_20[refseq_20GCF_5F000690715.1_202014-05-13] 70,188 sequences; 1,075,931,597 total letters Query= NC_028379.1 Length=205896 Score E Sequences producing significant alignments: (Bits) Value seq6155 152 7e-32 seq54351 96.9 5e-15 >seq6155 Length=1204 Score = 152 bits (168), Expect = 7e-32 Identities = 301/441 (68%), Gaps = 17/441 (4%) Strand=Plus/Plus Query 13600 CGCCGGGAGACTACGTGAACATGACGGCCGACTGCGTGGCCTTCGTGAAAGACAGGGGGT 13659 |||| | || ||| |||||||| || ||||||| |||| | | ||| || || Sbjct 83 CGCCCGACGAGTACCTGAACATGGCGAAGGACTGCGGCAGCTTCAGGGA-GACCCGGCGT 141 Query 13660 ATC-TCGTGAGGCCCCTGAGCCTGGAAGAGGTCGAGTTTCCCATCGCCTACTCGATCGTG 13718 || | | | || ||||||| ||| |||| ||||| |||||||||||||| || || Sbjct 142 TTCATTGAGTTCCCGCTGAGCCAGGAGGAGGCTGAGTTCCCCATCGCCTACTCCATGGTC 201 Query 13719 ATCCACCACAAGATCGAGATGTTCGAGCGCCTCCTGAGGGCCATCTACGCCCCGCAGAAC 13778 |||||| |||| ||||||||||| ||||| ||||| || || ||||||||||||||||| Sbjct 202 ATCCACGACAAAATCGAGATGTTTGAGCGGCTCCTACGGTCCCTCTACGCCCCGCAGAAC 261 Query 13779 CTCTACTGCGTCCACGTGGACTCCAAGTCCGGCGACGAGTTCATCCGGGGCGTCTCGGCC 13838 |||||||||||||| | || |||||| | | ||| || || |||| Sbjct 262 GTCTACTGCGTCCACATTGATGGAAAGTCCCCAGCTGCCTTCCAAGAGGCTGTGCGGGCC 321 Query 13839 ATCGCCAGGTGCTTCCCTAACGTGGCCCTGGCCCACCGGCTGCACGACGTGGTGTACGGC 13898 |||| |||||||| || || |||| ||| | || || | | Sbjct 322 ATCGTAGCCTGCTTCCCCAATGTCTTTGTGGCTAACC-------CCCCGCGG----AGCC 370 Query 13899 TCCTGGAGTCGCGTGCAGGCCGACCTCAGCTGCATGTCGGACCTGGACGCCTCCCCCGTC 13958 |||||| || ||||||||||||||| ||||||| ||||||| | ||||||| Sbjct 371 TCCTGGTCCCGGCTGCAGGCCGACCTCAACTGCATGCAGGACCTGCTGGAGAGCCCCGTC 430 Query 13959 AAGTGGAGGTACCTGCTCA--ACCTGTGCGGGATGGACTTCCCGCTCAAGACCAACCTGG 14016 |||| || | |||| |||||| || || ||||| |||||||||| | Sbjct 431 CCCTGGAACTATGTCCTCAATACCTGT--GGCGCCGATTTCCCCATCAAGACCAATGCTG 488 Query 14017 AGATCGTGCGGGCGCTGAAGG 14037 |||| || || || ||||||| Sbjct 489 AGATGGTCCGTGCCCTGAAGG 509 >seq54351 Length=27108 Score = 96.9 bits (106), Expect = 5e-15 Identities = 246/368 (67%), Gaps = 16/368 (4%) Strand=Plus/Plus Query 13695 TTTCCCATCGCCTACTCGATCGTGATCCACCACAAGA---TCGAGATGTTCGAGCGCCTC 13751 || ||||||||||| || ||| || |||||| | |||| || ||||| ||| Sbjct 4909 TTCCCCATCGCCTATG---TCATGACCCTGCACAAGGAGTTTGAGACCTTTGAGCGGCTC 4965 Query 13752 CTGAGGGCCATCTACGCCCCGCAGAACCTCTACTGCGTCCACGTGGACTCCAAGTCCGGC 13811 | || || | || || || ||| |||||||| |||| |||||| ||||| || Sbjct 4966 TTCAGAGCAGTGTATATGCCCCAAAACATCTACTGCATCCATGTGGACGCCAAG----GC 5021 Query 13812 GACGAGTTCATCCG---GGGCGTCTCGGCCATCGCCAGG-TGCTTCCCTAACGTGGCCCT 13867 ||| | | | | ||||| ||| || | |||||||| |||| ||| Sbjct 5022 ACCGACTCCCTTCCATAGGGCGGTGCGGGGCCTGCTGGACTGCTTCCCCAACGCCTTCCT 5081 Query 13868 GGCCCACC-GGCTGCACGACGTGGTGTACGGCTCCTGGAGTCGCGTGCAGGCCGACCTCA 13926 ||| || ||| | | ||||||| |||||| | ||| ||| ||| |||||| Sbjct 5082 CGCCTCCCAGGCAGAGC-ACGTGGTCTACGGCGGCATCTCCCGCCTGCGGGCTGACCTCC 5140 Query 13927 GCTGCATGTCGGACCTGGACGCCTCCCCCGTCAAGTGGAGGTACCTGCTCAACCTGTGCG 13986 ||||||| |||||| ||||| |||| ||| | |||||||||||| |||| Sbjct 5141 ACTGCATGAGAGACCTGCTGGCCTCAGCCGTGCCCTGGCGCTACCTGCTCAACACCTGCG 5200 Query 13987 GGATGGACTTCCCGCTCAAGACCAACCTGGAGATCGTGCGGGCGCTGAAGGCCCTGGGCG 14046 | ||||||||| | ||||| |||| ||||||||| || |||||||| || || | Sbjct 5201 GCCAGGACTTCCCCTTGAAGACTAACCGGGAGATCGTCCGACTGCTGAAGGGTCTTGGGG 5260 Query 14047 GCAAGAAC 14054 | |||||| Sbjct 5261 GGAAGAAC 5268 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658161255162880