Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colius_20striatus_20[refseq_20GCF_5F000690715.1_202014-05-13]
70,188 sequences; 1,075,931,597 total letters
Query= NC_028491.1
Length=98392
Score E
Sequences producing significant alignments: (Bits) Value
seq25250 93.3 3e-14
>seq25250
Length=4203
Score = 93.3 bits (102), Expect = 3e-14
Identities = 159/228 (70%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539
|| || || || || | || | ||| ||||| |||||||| ||||| || || ||
Sbjct 3570 CCACCCCTCAGGCGTAGGACAAGATGCAGAGTAGATTCCTTTTGGATGTTGTAGTCAGAC 3629
Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599
|| || || ||||||| |||||||| || ||||| || | | ||| || || || ||
Sbjct 3630 AGGGTGCGTCCGTCTTCCAGTTGTTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGGGA 3689
Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCAC 34658
| ||||||||||| |||| || | || ||| | ||| || || | ||| ||
Sbjct 3690 ATGCCCTCCTTGTCCTGGATC-TTGGCCTTGACGTTCTCAATGGTATCACTGGGCTCGAC 3748
Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706
||||| ||| || || || || || | || |||||||| ||||||||
Sbjct 3749 TTCCAAGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 3796
Score = 91.5 bits (100), Expect = 9e-14
Identities = 161/232 (69%), Gaps = 2/232 (1%)
Strand=Plus/Plus
Query 34476 GTCGCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATC 34535
|| ||| || || || |||| || | ||| ||||| |||||||| ||||| || ||
Sbjct 3110 GTTGCCACCCCTCAGGCGCAGGACAAGATGCAGAGTAGATTCCTTTTGGATGTTGTAGTC 3169
Query 34536 TGAAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGG 34595
|| || || || ||||||| |||||||| || || || || | | ||| || || ||
Sbjct 3170 AGACAGGGTACGTCCGTCTTCCAGTTGTTTGCCAGCGAAGATCAGCCTCTGCTGATCAGG 3229
Query 34596 CGGCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCT 34654
|| | ||||||||||| |||| || | || || | ||| || || | ||
Sbjct 3230 GGGAATGCCCTCCTTGTCCTGGATC-TTGGCCTTGACATTCTCAATGGTATCACTGGGCT 3288
Query 34655 CCACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706
| ||||||| ||| || || || || || | || |||||||| ||||||||
Sbjct 3289 CGACTTCCAAGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 3340
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 314460375185804
| Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |