Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colius_20striatus_20[refseq_20GCF_5F000690715.1_202014-05-13]
70,188 sequences; 1,075,931,597 total letters
Query= NC_028636.1
Length=135952
Score E
Sequences producing significant alignments: (Bits) Value
seq25250 140 3e-28
seq30392 98.7 9e-16
>seq25250
Length=4203
Score = 140 bits (154), Expect = 3e-28
Identities = 169/230 (73%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047
|||||||| ||||| || || ||||| |||||| | || ||||| ||||| || ||
Sbjct 4024 ATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACTCTGGAAGTCGAGCCCAGT 3965
Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107
|| | || |||| |||||| || || ||||||||||| ||||| || ||||| ||
Sbjct 3964 GATACCATCGAGAATGTCAAAGCCAAGATCCAAGACAAAGAGGGCATTCCCCCCGACCAG 3905
Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167
||| | | || | ||| ||||||||| |||||||| | ||| | || || ||||||
Sbjct 3904 CAGAGGCTGATCTTCGCTGGCAAACAACTGGAAGACGGACGCACCCTGTCTGACTACAAC 3845
Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217
|| || || ||||| ||| | ||| | || |||| |||||||||| ||
Sbjct 3844 ATCCAGAAAGAGTCCACCCTCCATCTTGTCCTGCGCCTGCGGGGTGGAAT 3795
>seq30392
Length=48271
Score = 98.7 bits (108), Expect = 9e-16
Identities = 149/212 (70%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 27006 ACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCCGACTCGATTGAGATGGTC 27065
|| ||||| |||||| | || |||||||| || || || ||| | ||||||| ||
Sbjct 48270 ACCCTGACTGGCAAGACCATCACTCTTGAGGTTGAGCCCAGTGACACCATTGAGAATGTG 48211
Query 27066 AAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAACAGCGTTTAATATACGCC 27125
|| |||||||||||||| |||||||| || || || || ||| | | || | ||
Sbjct 48210 AAGGCTAAAATTCAAGACAAGGAAGGCATTCCCCCTGACCAGCAGAGGCTGATCTTTGCT 48151
Query 27126 GGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAACATTCAAAAGGAGTCGACC 27185
|| || || |||| ||| | ||| | || || |||||||| || |||||||| ||
Sbjct 48150 GGGAAGCAGCTGGAGGACGGACGCACCCTGTCTGACTACAACATCCAGAAGGAGTCCACT 48091
Query 27186 TTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217
| ||| | || |||| || ||||||| ||
Sbjct 48090 CTCCATCTTGTGCTGCGCCTGAGGGGTGGGAT 48059
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 434536824341760
| Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |