Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colius_20striatus_20[refseq_20GCF_5F000690715.1_202014-05-13] 70,188 sequences; 1,075,931,597 total letters Query= NC_029255.1 Length=129563 Score E Sequences producing significant alignments: (Bits) Value seq21222 105 6e-18 seq14414 93.3 3e-14 >seq21222 Length=134394 Score = 105 bits (116), Expect = 6e-18 Identities = 102/131 (78%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 3254 GAGCTCTTCCGAGATGGGGTAAACTGGGGGCGCATTGTTGCTTTCTTTGAGTTTGGTGGT 3313 |||||| ||||||| ||||| |||||||| | || || || ||||||||||| || || Sbjct 1577 GAGCTCGTCCGAGACGGGGTGAACTGGGGCAGGATCGTGGCCTTCTTTGAGTTCGGCGGC 1636 Query 3314 GTTATGTGTGTGGAAAGCGTCAATAGAGGCATACCCTCCCTCGTTGACAACATTGCCGCG 3373 || ||||| ||||| |||||||| | | || | ||||||| |||| ||| ||||| Sbjct 1637 GTGATGTGCGTGGAGAGCGTCAACCGGGAGATGTCTCCCCTCGTGGACAGCATCGCCGCC 1696 Query 3374 TGGATGACAGA 3384 |||||||| || Sbjct 1697 TGGATGACCGA 1707 >seq14414 Length=70000 Score = 93.3 bits (102), Expect = 3e-14 Identities = 117/161 (73%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 118534 AGCCCTGTCAGGTGAGCAATCATGTATGTCAACAAACTGTAGCTGGCTACATTAAAAGGA 118593 |||||||| | || |||||||||||||| | || |||||||| | ||| ||||| Sbjct 68845 AGCCCTGTGACATGGGCAATCATGTATGTGAGCAGTGAATAGCTGGCAATATTGAAAGGC 68904 Query 118594 ACACCCAGACCCATGTCTGCTGATCTCTGGTACAATTGGCAAGAGAGCTCCCCGTTTGCA 118653 || || || ||||| ||| | || ||||| || | ||||||||| | || || ||| | Sbjct 68905 ACTCCAAGTCCCATATCTCCAGACCTCTGATAGAGTTGGCAAGACAATTCACCATTTAGA 68964 Query 118654 ACATAAAACTGACTTATGATGTGACATGGAGGCAGAACCAT 118694 ||||| ||||| | | | || || ||||||| | |||| Sbjct 68965 ACATAGAACTGGCAAAGGGCATGGCACGGAGGCAAAGCCAT 69005 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414122249810032