Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colius_20striatus_20[refseq_20GCF_5F000690715.1_202014-05-13] 70,188 sequences; 1,075,931,597 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq25250 86.0 4e-12 >seq25250 Length=4203 Score = 86.0 bits (94), Expect = 4e-12 Identities = 161/235 (69%), Gaps = 4/235 (2%) Strand=Plus/Minus Query 27784 AGTAAAATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAA 27843 || |||||||| || |||||||| || || ||||| || || || | || ||||| Sbjct 4030 AGAAAAATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACTCTGGAAGTCGAG 3971 Query 27844 AGCACCGA--CGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGA 27901 || || | || | ||| |||||| || || |||||||| || |||| Sbjct 3970 CCCAGTGATACCATCGAGAAT--GTCAAAGCCAAGATCCAAGACAAAGAGGGCATTCCCC 3913 Query 27902 TGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCG 27961 || ||||| || | || || || || |||||| |||| |||| ||||| | |||| | Sbjct 3912 CCGACCAGCAGAGGCTGATCTTCGCTGGCAAACAACTGGAAGACGGACGCACCCTGTCTG 3853 Query 27962 ATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 | ||||||||||| |||||| ||| | ||| | || |||| |||| || || Sbjct 3852 ACTACAACATCCAGAAAGAGTCCACCCTCCATCTTGTCCTGCGCCTGCGGGGTGG 3798 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355557989520276