Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colius_20striatus_20[refseq_20GCF_5F000690715.1_202014-05-13] 70,188 sequences; 1,075,931,597 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq30392 185 2e-41 seq25250 163 7e-35 >seq30392 Length=48271 Score = 185 bits (204), Expect = 2e-41 Identities = 168/212 (79%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || |||||||| ||||||||||| || |||||||| || || | ||||| | ||||||| Sbjct 47621 AGCACAAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGTCCATCT 47680 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 ||||||||||| || || ||||| || | || |||||||| |||| |||||||||||| Sbjct 47681 TCCAGCTGCTTCCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTGTCC 47740 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| ||||| || || ||||||||| ||||||||||| ||||| ||| Sbjct 47741 TGGATCTTGGCCTTCACATTCTCAATGGTGTCACTAGGCTCAACCTCGAGGGTGATGGTC 47800 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || || ||||| ||||| | |||||| Sbjct 47801 TTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 47832 Score = 167 bits (184), Expect = 5e-36 Identities = 164/212 (77%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || ||||| || ||||||||||| || |||||||| || || | ||||| | ||||||| Sbjct 47849 AGCACAAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCATCT 47908 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 ||||||||||| || || ||||| || | || |||||||| |||| |||||||||||| Sbjct 47909 TCCAGCTGCTTCCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTGTCC 47968 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| ||||| || || ||||||||| | || || || | ||||| ||| Sbjct 47969 TGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCGACTTCCAAGGTGATGGTC 48028 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || || ||||| ||||| | |||||| Sbjct 48029 TTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 48060 Score = 145 bits (160), Expect = 2e-29 Identities = 149/195 (76%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || ||||| || ||||||||||| || |||||||| || || | ||||| | ||| || Sbjct 48077 AGCACAAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGTCCGTCC 48136 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 ||||||||||| || || ||||| || | || |||||||| |||| ||||||||||| Sbjct 48137 TCCAGCTGCTTCCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTGTCT 48196 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 || || || ||||| || || ||||||||| | |||||||| |||||||| ||| Sbjct 48197 TGAATTTTAGCCTTCACATTCTCAATGGTGTCACTGGGCTCAACCTCAAGAGTGATGGTC 48256 Query 211083 TTTCCCGTGAGAGTC 211097 || || || || ||| Sbjct 48257 TTGCCAGTCAGGGTC 48271 >seq25250 Length=4203 Score = 163 bits (180), Expect = 7e-35 Identities = 164/213 (77%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || ||||| || ||||||||||| || |||||||| || || | ||||| | ||||||| Sbjct 3357 AGCACAAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGTCCATCT 3416 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||| ||||| |||||||| || | || ||||| || |||| || || |||||| Sbjct 3417 TCCAGCTGTTTGCCAGCGAAGATCAGCCTCTGCTGGTCGGGGGGAATGCCCTCTTTGTCC 3476 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || |||||||| ||||||||| | || || || | ||||| ||| Sbjct 3477 TGGATCTTGGCCTTGACGTTTTCTATGGTGTCACTGGGCTCGACTTCCAAGGTGATGGTC 3536 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCATT 211115 || || || || ||||| ||||| | ||||||| Sbjct 3537 TTGCCAGTCAGGGTCTTCACAAAGATCTGCATT 3569 Score = 163 bits (180), Expect = 7e-35 Identities = 165/215 (77%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 |||||||| || || ||||||||||| |||||||| || || | ||||| | ||| ||| Sbjct 3813 AGGACAAGATGGAGGGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGTCCGTCT 3872 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 ||||| || ||||| |||||||| || | || ||||| || |||| || || ||||| Sbjct 3873 TCCAGTTGTTTGCCAGCGAAGATCAGCCTCTGCTGGTCGGGGGGAATGCCCTCTTTGTCT 3932 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| ||| || || |||||||| ||| | || || || |||||||| ||| Sbjct 3933 TGGATCTTGGCTTTGACATTCTCGATGGTATCACTGGGCTCGACTTCCAGAGTGATGGTC 3992 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 || || || || ||||| ||||| | ||||||||| Sbjct 3993 TTGCCAGTCAGGGTCTTCACAAAGATCTGCATTTT 4027 Score = 147 bits (162), Expect = 5e-30 Identities = 161/214 (75%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 210902 TAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATC 210961 ||||||||| || ||||| || || ||||||||||| || || | ||||| | ||| || Sbjct 3584 TAGGACAAGATGCAGAGTAGATTCCTTTTGGATGTTGTAGTCAGACAGGGTGCGTCCGTC 3643 Query 210962 TTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTC 211021 |||||| || ||||| || ||||| || | || || ||||| |||| || |||||||| Sbjct 3644 TTCCAGTTGTTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGGGAATGCCCTCCTTGTC 3703 Query 211022 CTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGT 211081 ||||||||| || ||||| || ||||| ||| | || || || | ||||| || Sbjct 3704 CTGGATCTTGGCCTTGACGTTCTCAATGGTATCACTGGGCTCGACTTCCAAGGTGATGGT 3763 Query 211082 CTTTCCCGTGAGAGTCTTTACAAACACCTGCATT 211115 ||| || || || ||||| ||||| | ||||||| Sbjct 3764 CTTGCCAGTCAGGGTCTTCACAAAGATCTGCATT 3797 Score = 145 bits (160), Expect = 2e-29 Identities = 160/213 (75%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 |||||||| || ||||| || || ||||||||||| || || | ||||| | ||| ||| Sbjct 3129 AGGACAAGATGCAGAGTAGATTCCTTTTGGATGTTGTAGTCAGACAGGGTACGTCCGTCT 3188 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 ||||| || ||||| |||||||| || | || || ||||| |||| || ||||||||| Sbjct 3189 TCCAGTTGTTTGCCAGCGAAGATCAGCCTCTGCTGATCAGGGGGAATGCCCTCCTTGTCC 3248 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || || || || ||||| ||| | || || || | ||||| ||| Sbjct 3249 TGGATCTTGGCCTTGACATTCTCAATGGTATCACTGGGCTCGACTTCCAAGGTGATGGTC 3308 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCATT 211115 || || || || ||||| ||||| | ||||||| Sbjct 3309 TTGCCAGTCAGGGTCTTCACAAAGATCTGCATT 3341 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1158109593442620