Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colius_20striatus_20[refseq_20GCF_5F000690715.1_202014-05-13] 70,188 sequences; 1,075,931,597 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq25250 109 5e-19 >seq25250 Length=4203 Score = 109 bits (120), Expect = 5e-19 Identities = 149/208 (72%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 39081 ATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTG 39140 ||| || ||| |||||| || || || || || | || || ||| |||| || || || Sbjct 3821 ATGGAGGGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGTCCGTCTTCCAGTTG 3880 Query 39141 TTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTT 39200 |||||| || || || || | ||||||||||| ||| | || ||||||||| ||| || Sbjct 3881 TTTGCCAGCGAAGATCAGCCTCTGCTGGTCGGGGGGAATGCCCTCTTTGTCTTGGATCTT 3940 Query 39201 CTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGT 39260 ||||| || | | ||||| || | ||| || |||| ||||| | || || || Sbjct 3941 GGCTTTGACATTCTCGATGGTATCACTGGGCTCGACTTCCAGAGTGATGGTCTTGCCAGT 4000 Query 39261 CAGCGTTTTAACAAAGATTTGCATCTTT 39288 ||| || || |||||||| ||||| ||| Sbjct 4001 CAGGGTCTTCACAAAGATCTGCATTTTT 4028 Score = 98.7 bits (108), Expect = 9e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117 || || || | ||| | ||| | ||| || ||| ||| || || || || || || | Sbjct 3342 CCACCCCTCAGGCGCAGCACAAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAC 3401 Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGC 39177 || || ||| | || || ||||||||||| || || || || | ||||||||||| ||| Sbjct 3402 AGGGTGCGTCCATCTTCCAGCTGTTTGCCAGCGAAGATCAGCCTCTGCTGGTCGGGGGGA 3461 Query 39178 ACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACG 39237 | || |||||||||| ||| || |||| | | | || || || | ||| || Sbjct 3462 ATGCCCTCTTTGTCCTGGATCTTGGCCTTGACGTTTTCTATGGTGTCACTGGGCTCGACT 3521 Query 39238 TCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 |||| ||||| | || || ||||| || || |||||||| ||||| Sbjct 3522 TCCAAGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 3568 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429178159713644