Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colius_20striatus_20[refseq_20GCF_5F000690715.1_202014-05-13] 70,188 sequences; 1,075,931,597 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq25250 107 1e-18 >seq25250 Length=4203 Score = 107 bits (118), Expect = 1e-18 Identities = 146/201 (73%), Gaps = 2/201 (1%) Strand=Plus/Minus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 ||||||||||| || || || ||||| || || || || |||||||| ||||| || || Sbjct 4027 AAAATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACTCTGGAAGTCGAGCCC 3968 Query 23668 ACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGA 23726 | || || | || ||| | ||| | || | | |||||||| || | || || || Sbjct 3967 AGTGATACCATCGAGAATGTCAAAGCCAAGA-TCCAAGACAAAGAGGGCATTCCCCCCGA 3909 Query 23727 TCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTA 23786 || ||| | | || || || ||||||||||||||||||| |||||| | || || Sbjct 3908 CCAGCAGAGGCTGATCTTCGCTGGCAAACAACTGGAAGACGGACGCACCCTGTCTGACTA 3849 Query 23787 CAACATACAAAAAGAGTCCAC 23807 |||||| || ||||||||||| Sbjct 3848 CAACATCCAGAAAGAGTCCAC 3828 Score = 87.8 bits (96), Expect = 1e-12 Identities = 138/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 ||||||||| || || || ||||| || || || || ||||| | ||||| || ||| Sbjct 3797 AATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCTTGGAAGTCGAGCCCAG 3738 Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || || |||| | | || || || ||||| || || | || || ||||| Sbjct 3737 TGATACCATTGAGAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCTGATCA 3678 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | | || ||||| ||||||||||||||||||| |||||| | || ||||| Sbjct 3677 GCAGAGGCTGATCTTTGCTGGCAAACAACTGGAAGACGGACGCACCCTGTCTGACTACAA 3618 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| ||||| || || || Sbjct 3617 CATCCAAAAGGAATCTAC 3600 Score = 82.4 bits (90), Expect = 5e-11 Identities = 139/199 (70%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 ||||||||| || || || ||||| || || || || ||||| | ||||| || ||| Sbjct 3341 AATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCTTGGAAGTCGAGCCCAG 3282 Query 23670 GGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728 || || |||| ||| | || | || | | ||||| || || | || || |||| Sbjct 3281 TGATACCATTGAGAATGTCAAGGCCAAGA-TCCAGGACAAGGAGGGCATTCCCCCTGATC 3223 Query 23729 AACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACA 23788 | ||| | | || || || ||||||||||||||||||| ||| || | || |||| Sbjct 3222 AGCAGAGGCTGATCTTCGCTGGCAAACAACTGGAAGACGGACGTACCCTGTCTGACTACA 3163 Query 23789 ACATACAAAAAGAGTCCAC 23807 |||| ||||| || || || Sbjct 3162 ACATCCAAAAGGAATCTAC 3144 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337720461095504