Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colius_20striatus_20[refseq_20GCF_5F000690715.1_202014-05-13] 70,188 sequences; 1,075,931,597 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq30392 147 5e-30 seq25250 134 3e-26 seq66028 93.3 1e-13 seq41676 84.2 5e-11 >seq30392 Length=48271 Score = 147 bits (162), Expect = 5e-30 Identities = 147/191 (77%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560 ||| ||||| ||||||||||| || || |||| ||||| |||| || || | ||||| Sbjct 47848 CAGCACAAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCATC 47907 Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620 ||| ||||||||||| || ||||| || | || ||||| || ||||| ||||||||||| Sbjct 47908 TTCCAGCTGCTTCCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTGTC 47967 Query 225621 TTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680 |||||||| ||||||| || |||||||| || || || || || ||||| || Sbjct 47968 CTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCGACTTCCAAGGTGATGGT 48027 Query 225681 CTTGCCCGTCA 225691 |||||| |||| Sbjct 48028 CTTGCCAGTCA 48038 Score = 141 bits (156), Expect = 2e-28 Identities = 146/191 (76%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560 ||| ||||||||||||||||| || || |||| ||||| || | || || | ||||| Sbjct 47620 CAGCACAAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGTCCATC 47679 Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620 ||| |||||||||||||| ||||| || | || ||||| || ||||| ||||||||||| Sbjct 47680 TTCCAGCTGCTTCCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTGTC 47739 Query 225621 TTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680 |||||||| ||||||| || |||||||| | || || || | ||||| || Sbjct 47740 CTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTAGGCTCAACCTCGAGGGTGATGGT 47799 Query 225681 CTTGCCCGTCA 225691 |||||| |||| Sbjct 47800 CTTGCCAGTCA 47810 Score = 129 bits (142), Expect = 1e-24 Identities = 143/191 (75%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560 ||| ||||| ||||||||||| || || |||| ||||| || | || || | || || Sbjct 48076 CAGCACAAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGTCCGTC 48135 Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620 || |||||||||||||| ||||| || | || ||||| || ||||| ||||||||||| Sbjct 48136 CTCCAGCTGCTTCCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTGTC 48195 Query 225621 TTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680 ||| || || ||||||| || |||||||| || || || || | ||||| || Sbjct 48196 TTGAATTTTAGCCTTCACATTCTCAATGGTGTCACTGGGCTCAACCTCAAGAGTGATGGT 48255 Query 225681 CTTGCCCGTCA 225691 |||||| |||| Sbjct 48256 CTTGCCAGTCA 48266 >seq25250 Length=4203 Score = 134 bits (148), Expect = 3e-26 Identities = 158/214 (74%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560 ||| ||||| ||||||||||| || || |||| ||||| || | || || | ||||| Sbjct 3356 CAGCACAAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGTCCATC 3415 Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620 ||| ||||| || ||||||||||| || | || |||||||| ||||| || || ||||| Sbjct 3416 TTCCAGCTGTTTGCCAGCGAAGATCAGCCTCTGCTGGTCGGGGGGAATGCCCTCTTTGTC 3475 Query 225621 TTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680 |||||||| ||| || ||| |||||||| || || || || || ||||| || Sbjct 3476 CTGGATCTTGGCCTTGACGTTTTCTATGGTGTCACTGGGCTCGACTTCCAAGGTGATGGT 3535 Query 225681 CTTGCCCGTCAAAGTTTTTATGAACACTTGCATT 225714 |||||| |||| || || | || | |||||| Sbjct 3536 CTTGCCAGTCAGGGTCTTCACAAAGATCTGCATT 3569 Score = 129 bits (142), Expect = 1e-24 Identities = 163/224 (73%), Gaps = 0/224 (0%) Strand=Plus/Plus Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552 || || | ||||||||| ||||| ||||| ||||| |||| ||||| || | || || Sbjct 3804 CGCAGGCGCAGGACAAGATGGAGGGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTG 3863 Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 | || ||||| || || || ||||||||||| || | || |||||||| ||||| || Sbjct 3864 CGTCCGTCTTCCAGTTGTTTGCCAGCGAAGATCAGCCTCTGCTGGTCGGGGGGAATGCCC 3923 Query 225613 TCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAAC 225672 || |||||||||||||| || ||| |||||||| || || || || || | Sbjct 3924 TCTTTGTCTTGGATCTTGGCTTTGACATTCTCGATGGTATCACTGGGCTCGACTTCCAGA 3983 Query 225673 GTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716 ||||| |||||||| |||| || || | || | |||||||| Sbjct 3984 GTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATTTT 4027 Score = 120 bits (132), Expect = 7e-22 Identities = 155/214 (72%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560 ||||||||| || ||||| ||||| ||||||| ||||| || | || || | || || Sbjct 3128 CAGGACAAGATGCAGAGTAGATTCCTTTTGGATGTTGTAGTCAGACAGGGTACGTCCGTC 3187 Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620 ||| || || || ||||||||||| || | || || || || ||||| || |||||||| Sbjct 3188 TTCCAGTTGTTTGCCAGCGAAGATCAGCCTCTGCTGATCAGGGGGAATGCCCTCCTTGTC 3247 Query 225621 TTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680 |||||||| ||| ||| || ||||| || || || || || || ||||| || Sbjct 3248 CTGGATCTTGGCCTTGACATTCTCAATGGTATCACTGGGCTCGACTTCCAAGGTGATGGT 3307 Query 225681 CTTGCCCGTCAAAGTTTTTATGAACACTTGCATT 225714 |||||| |||| || || | || | |||||| Sbjct 3308 CTTGCCAGTCAGGGTCTTCACAAAGATCTGCATT 3341 >seq66028 Length=699 Score = 93.3 bits (102), Expect = 1e-13 Identities = 128/179 (72%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 7552 CAACTTTACAACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTATG 7611 ||| | |||||||| || | || || |||||||| || || || |||||| | ||||| Sbjct 615 CAAATCTACAACGTAATCGTCACCGCCCATGCCTTCGTCATAATCTTCTTTATAGTTATA 556 Query 7612 CCGGTTATGATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGAT 7671 || ||||||| || ||||||||||| ||| | ||||| | || | || || || || Sbjct 555 CCAATTATGATCGGAGGTTTCGGAAACTGACTTGTTCCACTTATACTCGGCGCCCCCGAC 496 Query 7672 ATGGCTTTTCCAAGGCTTAACAATATAAGTTTTTGATTACTACCGCCTTCCTTATTTCT 7730 || || || ||| | | || || || || || || |||| || || ||||| |||| Sbjct 495 ATAGCATTCCCACGCATAAATAACATGAGCTTCTGGCTACTCCCTCCATCCTTTCTTCT 437 >seq41676 Length=22104 Score = 84.2 bits (92), Expect = 5e-11 Identities = 123/174 (71%), Gaps = 0/174 (0%) Strand=Plus/Plus Query 7551 CCAACTTTACAACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTAT 7610 |||| |||||||||| ||| |||| || || ||||| || || || ||||| | || || Sbjct 453 CCAAATTTACAACGTAATTGTTACTGCCCACGCCTTCGTCATAATCTTCTTCATAGTAAT 512 Query 7611 GCCGGTTATGATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGA 7670 ||| | ||| | | ||||||||||| || | || ||| | || ||| | || | Sbjct 513 GCCAATCATGGTCAGAGGTTTCGGAAACTGGCTTGTCCCTCTTATATGTGGCACCCCCAA 572 Query 7671 TATGGCTTTTCCAAGGCTTAACAATATAAGTTTTTGATTACTACCGCCTTCCTT 7724 || || || ||| | | || || ||||| |||||| |||| || || ||||| Sbjct 573 GATAGCATTCCCACGTATAAATAACATAAGCTTTTGACTACTTCCCCCATCCTT 626 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1191458776070472