Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colius_20striatus_20[refseq_20GCF_5F000690715.1_202014-05-13] 70,188 sequences; 1,075,931,597 total letters Query= NC_030394.2 Length=126965 Score E Sequences producing significant alignments: (Bits) Value seq14414 120 2e-22 seq41348 105 5e-18 seq13040 91.5 1e-13 >seq14414 Length=70000 Score = 120 bits (132), Expect = 2e-22 Identities = 126/166 (76%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 29713 TAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGG 29772 |||||| ||||| || || |||||||| ||||| || || |||||||| || || || || Sbjct 68844 TAGCCCTGTGACATGGGCAATCATGTATGTGAGCAGTGAATAGCTGGCAATATTGAAAGG 68903 Query 29773 CACCCCGAGCCCCATGTCCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCCGTCGCT 29832 ||| || || ||||| || || |||||||| ||||| ||||| || | || || | Sbjct 68904 CACTCCAAGTCCCATATCTCCAGACCTCTGATAGAGTTGGCAAGACAATTCACCATTTAG 68963 Query 29833 CACGTAAAACTGACACATGGCATGGCACGGAGGAAGGGCCATGAGA 29878 || || ||||| || | ||||||||||||||| | ||||| ||| Sbjct 68964 AACATAGAACTGGCAAAGGGCATGGCACGGAGGCAAAGCCATCAGA 69009 >seq41348 Length=6166 Score = 105 bits (116), Expect = 5e-18 Identities = 113/147 (77%), Gaps = 2/147 (1%) Strand=Plus/Minus Query 30017 AAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTG-TGCTCGAA 30075 ||||||||||||||||| || || || ||||||| |||||||| || ||| |||| ||| Sbjct 3204 AAATGCCTCCACTGGAAACCATAAACTGGTCCCAAATCTCCCTCCTCTCTGGTGCT-GAA 3146 Query 30076 GCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTC 30135 ||| ||| |||| || || | || || || || ||||| ||||| || ||||| | Sbjct 3145 ACCCTGCTTATCCAGGAACTCACGTGATCCATTAGCATCCCAAATCTTCACGCCCTTTGC 3086 Query 30136 GGAGAGCTCTTTGGAGTTTGTGGACCC 30162 ||||||||||||| ||||| || || Sbjct 3085 AGAGAGCTCTTTGGCATTTGTAGAACC 3059 >seq13040 Length=11741 Score = 91.5 bits (100), Expect = 1e-13 Identities = 85/108 (79%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 114284 TTAAGCTCCCTGCTGAGGACTACGTTTAGCCTGTCTCTCAGAGGTCTATTCTTTTCGGGG 114343 || |||||| ||||||| |||| || | |||||| | | ||| | |||||| || || Sbjct 7323 TTGAGCTCCGTGCTGAGCACTATATTAATTCTGTCTTTTAAAGGACGATTCTTCTCAGGA 7382 Query 114344 ATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTACCT 114391 ||||||||||| || |||||||||||||||| | ||||| |||||| Sbjct 7383 ATGGAGAACCACGTTTTTCTACCCATTATCAGTGCATTCTGTTTACCT 7430 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 405815761398568