Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colius_20striatus_20[refseq_20GCF_5F000690715.1_202014-05-13] 70,188 sequences; 1,075,931,597 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq54367 122 7e-23 seq22784 104 2e-17 >seq54367 Length=7739 Score = 122 bits (134), Expect = 7e-23 Identities = 108/134 (81%), Gaps = 1/134 (1%) Strand=Plus/Plus Query 4562 ATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACC 4621 || || |||| ||||||| || || ||||| |||||||| || | ||| |||||||| || Sbjct 4160 ATTCATACCT-CGTCTCTACTGATGAGTTCATTAGAAAAAGTGAGTCCAGGCATTAATCC 4218 Query 4622 TCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGC 4681 ||| || || |||||||| || | ||||| || ||||||||||| || ||||| ||||| Sbjct 4219 TCTTTTCTTCAGCCAAAAAATTGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCCACGGC 4278 Query 4682 GGCAAACGCTACTA 4695 ||||| ||||||| Sbjct 4279 TGCAAAAGCTACTA 4292 >seq22784 Length=40504 Score = 104 bits (114), Expect = 2e-17 Identities = 96/122 (79%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 4572 TCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCTTTTTA 4631 || ||||||||||| || || || || || || | ||| ||||| | || ||||| || Sbjct 31404 TCATCTCTGCTAATAAGCTCATTGGAGAAAGTCAGTCCAGGCATCAGGCCCCTCTTCTTC 31463 Query 4632 AGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAAACGCT 4691 |||||||||||||| ||||| || || |||||||| |||||||| || || ||||| || Sbjct 31464 AGCCAAAATATAGCAGCAAAGGAACCCGAAAAGAAGATGCCTTCAACTGCAGCAAAGGCA 31523 Query 4692 AC 4693 || Sbjct 31524 AC 31525 Score = 96.9 bits (106), Expect = 3e-15 Identities = 100/130 (77%), Gaps = 1/130 (1%) Strand=Plus/Plus Query 4922 AAATCTTTCT-ACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAAA 4980 ||| || ||| || | |||||| ||||| || || ||||||||||||||||| |||| || Sbjct 36587 AAAGCTCTCTCACCAGGTTTTCATTTACAATTCCATCACTGGCTGCAAAAAATGCCAGAA 36646 Query 4981 CATGAGATATAAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCAGTGGGGCAAATCTTTAG 5040 |||||| ||||||| | ||| || | || || || |||||||| || | ||| || | Sbjct 36647 TATGAGAGATAAAGTGTTTTTCATCTGCTTTCAGCTTGTTCCAGTGAGGAAGATCCTTCG 36706 Query 5041 TTAAATCAAC 5050 |||||||| Sbjct 36707 ACAAATCAAC 36716 Score = 87.8 bits (96), Expect = 2e-12 Identities = 78/98 (80%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 4247 AACACCAAATTTTTGGTATTCGGATACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAA 4306 |||| |||| |||||||| || || ||||| || |||||||| ||||| ||||| | Sbjct 25544 AACAGCAAAACGCTGGTATTCTGAAACCCGCTTCTCAAAGAAATTTGTTTTTCCTTCCAG 25603 Query 4307 CGAAATATTTTCCATAAAATCAAACGGATTAGTTGCGT 4344 |||||||| |||||||||||||| ||||| ||||| Sbjct 25604 AGAAATATTCTCCATAAAATCAAAAGGATTTTCTGCGT 25641 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 426684294832604