Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colius_20striatus_20[refseq_20GCF_5F000690715.1_202014-05-13] 70,188 sequences; 1,075,931,597 total letters Query= NC_030842.1 Length=115510 Score E Sequences producing significant alignments: (Bits) Value seq41348 118 8e-22 seq14414 113 3e-20 >seq41348 Length=6166 Score = 118 bits (130), Expect = 8e-22 Identities = 129/169 (76%), Gaps = 2/169 (1%) Strand=Plus/Minus Query 27489 CATGTCCGTGTACTCTGCTCCGAAATGCCTCCATTGGAACCCGTACACCGGTCCCAGGTC 27548 ||| || |||| |||||||| ||||||||||| ||||| || || || ||||||| || Sbjct 3226 CATATCTTTGTATTCTGCTCCAAAATGCCTCCACTGGAAACCATAAACTGGTCCCAAATC 3167 Query 27549 TCCCTCTTCCCTG-TGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGT 27607 |||||| || ||| |||| ||| ||| ||| |||| || || | || || || || | Sbjct 3166 TCCCTCCTCTCTGGTGCT-GAAACCCTGCTTATCCAGGAACTCACGTGATCCATTAGCAT 3108 Query 27608 CCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCC 27656 |||| ||||| || ||||| | ||||||||||||| ||||| || || Sbjct 3107 CCCAAATCTTCACGCCCTTTGCAGAGAGCTCTTTGGCATTTGTAGAACC 3059 >seq14414 Length=70000 Score = 113 bits (124), Expect = 3e-20 Identities = 124/165 (75%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 27207 TAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGG 27266 |||||| ||||| || || |||||||| ||||| || || |||||||| || || || || Sbjct 68844 TAGCCCTGTGACATGGGCAATCATGTATGTGAGCAGTGAATAGCTGGCAATATTGAAAGG 68903 Query 27267 TACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCATCGCT 27326 || || || ||||| || || |||||||| ||||| || || || | || |||| Sbjct 68904 CACTCCAAGTCCCATATCTCCAGACCTCTGATAGAGTTGGCAAGACAATTCACCATTTAG 68963 Query 27327 TACGTAAAACTGACATATGGCGTGGCACGGAGGAAGAGCCATGAG 27371 || || ||||| || | ||| ||||||||||| | |||||| || Sbjct 68964 AACATAGAACTGGCAAAGGGCATGGCACGGAGGCAAAGCCATCAG 69008 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 369191117536628