Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colius_20striatus_20[refseq_20GCF_5F000690715.1_202014-05-13] 70,188 sequences; 1,075,931,597 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq25250 138 3e-27 seq30392 127 5e-24 >seq25250 Length=4203 Score = 138 bits (152), Expect = 3e-27 Identities = 162/218 (74%), Gaps = 6/218 (3%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 ||||||||||| || || |||||||| ||||||||||| || | | || | || ||| Sbjct 3813 AGGACAAGATGGAGGGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGTCCGTCT 3872 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || ||| || |||||||| |||||||||||||| | | || || || || ||| Sbjct 3873 TCCAGTTGTTTGCCAGCGAAGATCAGCCTCTGCTGGTCGGGGGGAATGCCCTCTTTGTCT 3932 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATA 152069 || || || ||||||| |||| | | | || ||| ||| ||||| ||||| || Sbjct 3933 TGGATCTTGGCTTTGACATTCTCGATGGTATC---ACTGGGCTCGACTTCCAGAGTGATG 3989 Query 152070 GTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 || ||||| || || |||||||| |||| ||||||||| Sbjct 3990 GTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATTTT 4027 Score = 122 bits (134), Expect = 2e-22 Identities = 161/222 (73%), Gaps = 6/222 (3%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 ||||||||||| |||||||| || |||||||||||||| || | | || | || ||| Sbjct 3129 AGGACAAGATGCAGAGTAGATTCCTTTTGGATGTTGTAGTCAGACAGGGTACGTCCGTCT 3188 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || ||| || |||||||| ||||||||||| || | | || || ||||| || Sbjct 3189 TCCAGTTGTTTGCCAGCGAAGATCAGCCTCTGCTGATCAGGGGGAATGCCCTCCTTGTCC 3248 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATA 152069 || || || |||||| |||| | | | || ||| ||| ||||| | || || Sbjct 3249 TGGATCTTGGCCTTGACATTCTCAATGGTATC---ACTGGGCTCGACTTCCAAGGTGATG 3305 Query 152070 GTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTTACCC 152111 || ||||| || || |||||||| |||| ||||||| |||| Sbjct 3306 GTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATTCCACCC 3347 Score = 118 bits (130), Expect = 2e-21 Identities = 160/222 (72%), Gaps = 6/222 (3%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || |||||||| ||||| ||||| || ||||||||||| || | | || | |||||| Sbjct 3357 AGCACAAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGTCCATCT 3416 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || ||| || |||||||| |||||||||||||| | | || || || || || Sbjct 3417 TCCAGCTGTTTGCCAGCGAAGATCAGCCTCTGCTGGTCGGGGGGAATGCCCTCTTTGTCC 3476 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATA 152069 || || || ||||| | |||| | |||| ||| ||| ||||| | || || Sbjct 3477 TGGATCTTGGCCTTGACGTTTTCTATGGTGTC---ACTGGGCTCGACTTCCAAGGTGATG 3533 Query 152070 GTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTTACCC 152111 || ||||| || || |||||||| |||| ||||||| |||| Sbjct 3534 GTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATTCCACCC 3575 Score = 113 bits (124), Expect = 1e-19 Identities = 159/222 (72%), Gaps = 6/222 (3%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 ||||||||||| |||||||| || |||||||||||||| || | | || | || ||| Sbjct 3585 AGGACAAGATGCAGAGTAGATTCCTTTTGGATGTTGTAGTCAGACAGGGTGCGTCCGTCT 3644 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || ||| || || ||||| ||||||||||| || | | || || ||||| || Sbjct 3645 TCCAGTTGTTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGGGAATGCCCTCCTTGTCC 3704 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATA 152069 || || || ||||| |||| | | | || ||| ||| ||||| | || || Sbjct 3705 TGGATCTTGGCCTTGACGTTCTCAATGGTATC---ACTGGGCTCGACTTCCAAGGTGATG 3761 Query 152070 GTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTTACCC 152111 || ||||| || || |||||||| |||| ||||||| |||| Sbjct 3762 GTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATTCCACCC 3803 >seq30392 Length=48271 Score = 127 bits (140), Expect = 5e-24 Identities = 158/215 (73%), Gaps = 6/215 (3%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || |||||||| ||||| ||||| || ||||||||||| |||| | || | |||||| Sbjct 47849 AGCACAAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCATCT 47908 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || |||||||| ||||| |||||||||||||| | | || |||||||| || Sbjct 47909 TCCAGCTGCTTCCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTGTCC 47968 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATA 152069 || || || || ||| |||| | | |||| ||| ||| ||||| | || || Sbjct 47969 TGGATCTTGGCCTTCACATTCTCAATGGTGTC---ACTGGGCTCGACTTCCAAGGTGATG 48025 Query 152070 GTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || ||||| || || |||||||| |||| |||||| Sbjct 48026 GTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 48060 Score = 116 bits (128), Expect = 9e-21 Identities = 153/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || ||||| || ||||| ||||| || ||||||||||| || | | || | |||||| Sbjct 47621 AGCACAAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGTCCATCT 47680 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || ||||| || ||||| |||||||||||||| | | || |||||||| || Sbjct 47681 TCCAGCTGCTTCCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTGTCC 47740 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 || || || || ||| |||| | | |||| | ||| || || || || || || Sbjct 47741 TGGATCTTGGCCTTCACATTCTCAATGGTGTCACTAGGCTCAACCTCGAGGGTGATGGTC 47800 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||||| || || |||||||| |||| |||||| Sbjct 47801 TTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 47832 Score = 111 bits (122), Expect = 4e-19 Identities = 144/198 (73%), Gaps = 6/198 (3%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || |||||||| ||||| ||||| || ||||||||||| || | | || | || || Sbjct 48077 AGCACAAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGTCCGTCC 48136 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || ||||| || ||||| |||||||||||||| | | || |||||||| ||| Sbjct 48137 TCCAGCTGCTTCCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTGTCT 48196 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATA 152069 |||||||| || ||| |||| | | |||| ||| ||| || |||||||| || Sbjct 48197 TGAATTTTAGCCTTCACATTCTCAATGGTGTC---ACTGGGCTCAACCTCAAGAGTGATG 48253 Query 152070 GTTTTGCCCGTGAGAGTC 152087 || ||||| || || ||| Sbjct 48254 GTCTTGCCAGTCAGGGTC 48271 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1152783187704148