Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colius_20striatus_20[refseq_20GCF_5F000690715.1_202014-05-13] 70,188 sequences; 1,075,931,597 total letters Query= NC_033176.1 Length=224064 Score E Sequences producing significant alignments: (Bits) Value seq4510 158 2e-33 seq9089 116 5e-21 >seq4510 Length=123898 Score = 158 bits (174), Expect = 2e-33 Identities = 224/314 (71%), Gaps = 2/314 (1%) Strand=Plus/Minus Query 8289 GGAACGCGGCCAACGGACACCCCTTGACGTTGCTACAGACTAGAGACTGAATAGTTGCGC 8348 |||| || | || || || || || || ||| | |||| || ||| | | ||| Sbjct 5449 GGAAAGCAGTGAAAGGGCAGCCTTTCACATTGTTGCAGATGAGCTTCTGTAAGGAGGCGG 5390 Query 8349 TCTTGACGATCCCGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGG 8408 | |||| ||| | || ||||| | ||| |||||||||||||||||||||||| | || | Sbjct 5389 TATTGATGATGTCAAAGCCCACTTTTCCACCGAAGGTGCTGGGCTTCCAGTACTCAGGAG 5330 Query 8409 AGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGC 8468 ||||||| | || |||| || ||||| || ||||||||||| |||| || | || Sbjct 5329 AGCAGATAGCATTTCCCATCAGTCCTTTCAGAGAGAACGGAGCTCCCATTTCCACCATTG 5270 Query 8469 TCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCA 8528 | ||||| |||||||| ||||| |||||||| || | | || | ||| ||||||| Sbjct 5269 TTTCACCAAAGATGGCACCTGGACGTGGCTTTTCTACGAGAAGGCCTGGGTATAGCTCCA 5210 Query 8529 CAGCCTCGACGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATCTCCTTTTCTCCTGT-- 8586 ||| || | ||||| ||||| | ||||| || || || || ||||||||||| Sbjct 5209 TAGCATCAATATCTCCATAAAGCTCTTCCAGTTCAGCTGCCATTTCTTTTTCTCCTGTAA 5150 Query 8587 TTTATTAATAAAAA 8600 || || | |||||| Sbjct 5149 TTGATGATTAAAAA 5136 Score = 140 bits (154), Expect = 5e-28 Identities = 184/255 (72%), Gaps = 0/255 (0%) Strand=Plus/Minus Query 9231 TTCCCCGATAATGATGAGTCGAGTGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATG 9290 ||| || || | ||||||| ||| || |||||||| ||||| ||| ||| || || || Sbjct 3462 TTCACCTATTAGTATGAGTCTAGTAGTTTGGAACAGCTGCTCATCATCCCACTCAGGGTG 3403 Query 9291 TTCTTGTTTCAGAACATCGCACACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACAT 9350 || |||||||| | || || |||| |||||| ||||| ||||| || || |||||||| Sbjct 3402 CTCCTGTTTCAGGATGTCACAGACCCGGTTGTGCTCCCTCAGCCATATTGTTGCGTACAT 3343 Query 9351 CATGAGCCCAGGTACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATGTTTTCGGG 9410 ||| | || || |||| || || |||| || || |||| | ||| || ||| || Sbjct 3342 CATCAAGCCTGGGACCAAACCGAACACCTCCTGCCCCACAGAAAACTGCAAGTGTTCAGG 3283 Query 9411 CACTTCGGGAGGATAGATCATGTGCACCTGGACGTCTTTGACCGAGGGGGGATACATTTC 9470 || | || || |||||||| | |||| ||| || || | || ||||||||||| Sbjct 3282 GACATGAGGGGGGTAGATCATCTCTGCCTGAGTGTCCTTCACTGTTGGTGGATACATTTC 3223 Query 9471 ACCGTCAATCATCTG 9485 || ||||| ||||| Sbjct 3222 TCCATCAATGATCTG 3208 >seq9089 Length=12092 Score = 116 bits (128), Expect = 5e-21 Identities = 147/202 (73%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 8349 TCTTGACGATCCCGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGG 8408 |||| || ||| |||| || ||||||||||||||||||| ||||||||| | |||| Sbjct 6704 TCTTAACCATCTCGAAGCCGGTTGCTCCGCCGAAGGTGCTGGGTTTCCAGTACTCTGGGG 6763 Query 8409 AGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGC 8468 |||||||| ||| | | || || || ||||| || ||||| || | ||| | |||| Sbjct 6764 AGCAGATGGGGTTTCCAAGAAGCCCCTTCAGGGAAAATGGAGCTCCAATCTCCACCATGC 6823 Query 8469 TCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCA 8528 | || || || || ||||||| |||| || || | ||| || || | || | ||||| Sbjct 6824 TTTCCCCAAAAATACCGTTGGGTTGGGGTTTCTCGAGCAACAAGCCCGGATAAAACTCCA 6883 Query 8529 CAGCCTCGACGTCTCCGTAAAG 8550 ||| || | |||||| || || Sbjct 6884 GAGCATCAATGTCTCCATACAG 6905 Score = 100 bits (110), Expect = 4e-16 Identities = 174/253 (69%), Gaps = 10/253 (4%) Strand=Plus/Plus Query 9232 TCCCCGATAATGATGAGTCGAGTGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGT 9291 || ||||| | |||||| |||| |||||||| || |||||||| | ||| ||||| Sbjct 8893 TCACCGATGAGGATGAGCCGAGCCGTCTGGAAGAGCTGCTCGTCGCCCCAGCTGGGATGC 8952 Query 9292 TCTTGTTTCAGAACATCGCACACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATC 9351 || | |||| || ||||| || | |||||| || | ||||||| ||| ||||| Sbjct 8953 TCCCGCCTCAGCACGTCGCAGACGCGGTTGTGCTCGCGCAGCCAGAGCGTGCTGTACACG 9012 Query 9352 ATGAGCCCAGGTACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATGTTTTCGGGC 9411 ||||||| || | ||| || || |||| || || | ||||| || | | Sbjct 9013 CTGAGCCCCGGCAGCAGCCCGAACACCTCCTGCCCCATGGCCAGCTGCCTCTC------- 9065 Query 9412 ACTTCGGGAGGATAGATCATGTGCACCTGGACGTCTTTGACCGAGGGGGGATACATTTCA 9471 ||| |||| ||| | |||| ||||| || | | |||||| ||||||||||| || Sbjct 9066 -CTTGGGGA--ATACACCATGGGCACCGGGCCAGCCGTGACCGTGGGGGGATACACCTCG 9122 Query 9472 CCGTCAATCATCT 9484 ||||| | || || Sbjct 9123 CCGTCCACCACCT 9135 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 716247848139520