Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colius_20striatus_20[refseq_20GCF_5F000690715.1_202014-05-13] 70,188 sequences; 1,075,931,597 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq25250 131 4e-25 seq30392 122 2e-22 >seq25250 Length=4203 Score = 131 bits (144), Expect = 4e-25 Identities = 155/208 (75%), Gaps = 4/208 (2%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || || ||||| || || || || || || |||||| | || || || || ||| Sbjct 3565 CAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCTTGGAAGTCGA--GCCCAGTG 3508 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||| || |||||||| ||||| ||||||||||| || || || || ||||||| Sbjct 3507 ACACCATAGAAAACGTCAAGGCCAAGATCCAGGACAAAGAGGGCATTCCCCCCGACCAGC 3448 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | || |||||||| || |||||||| ||||||||| | || || | || || ||| Sbjct 3447 AGAGGCTGATCTTCGCTGGCAAACAGCTGGAAGATGGACGCACCCTGTCTGACTACAACA 3388 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGT 178129 |||| || || || || || |||||||| Sbjct 3387 TCCAGAAGGAGTCCACTCTCCATCTTGT 3360 Score = 127 bits (140), Expect = 5e-24 Identities = 160/217 (74%), Gaps = 7/217 (3%) Strand=Plus/Minus Query 177915 AAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAA 177974 ||||||| | || || ||||| || || || || || || ||||| || || || || Sbjct 4027 AAAATGC---AGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACTCTGGAAGTCGA- 3972 Query 177975 AGCTCAG--ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTC 178032 || ||| | ||||||||||| |||||| ||||| || |||||||| || || || | Sbjct 3971 -GCCCAGTGATACCATCGAGAATGTCAAAGCCAAGATCCAAGACAAAGAGGGCATTCCCC 3913 Query 178033 CGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCG 178092 | |||||||| | || |||||||| || ||||| || ||||| ||| | || || | | Sbjct 3912 CCGACCAGCAGAGGCTGATCTTCGCTGGCAAACAACTGGAAGACGGACGCACCCTGTCTG 3853 Query 178093 ATTATAACGTCCAAAAAGAATCAACACTGCATCTTGT 178129 | || ||| |||| ||||| || || || |||||||| Sbjct 3852 ACTACAACATCCAGAAAGAGTCCACCCTCCATCTTGT 3816 Score = 122 bits (134), Expect = 2e-22 Identities = 153/208 (74%), Gaps = 4/208 (2%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || || ||||| || || || || || || |||||| | || || || || ||| Sbjct 3337 CAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCTTGGAAGTCGA--GCCCAGTG 3280 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 | ||||| ||||| ||||| ||||| |||||||| || || || || || || |||| Sbjct 3279 ATACCATTGAGAATGTCAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCTGATCAGC 3220 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | || |||||||| || ||||| || ||||| ||| | || || | || || ||| Sbjct 3219 AGAGGCTGATCTTCGCTGGCAAACAACTGGAAGACGGACGTACCCTGTCTGACTACAACA 3160 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGT 178129 ||||||| ||||| || ||||||||||| Sbjct 3159 TCCAAAAGGAATCTACTCTGCATCTTGT 3132 Score = 122 bits (134), Expect = 2e-22 Identities = 153/208 (74%), Gaps = 4/208 (2%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || || ||||| || || || || || || |||||| | || || || || ||| Sbjct 3793 CAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCTTGGAAGTCGA--GCCCAGTG 3736 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 | ||||| ||||||||||| ||||| |||||||| || || || || || || |||| Sbjct 3735 ATACCATTGAGAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCTGATCAGC 3676 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | || ||||| || || ||||| || ||||| ||| | || || | || || ||| Sbjct 3675 AGAGGCTGATCTTTGCTGGCAAACAACTGGAAGACGGACGCACCCTGTCTGACTACAACA 3616 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGT 178129 ||||||| ||||| || ||||||||||| Sbjct 3615 TCCAAAAGGAATCTACTCTGCATCTTGT 3588 >seq30392 Length=48271 Score = 122 bits (134), Expect = 2e-22 Identities = 153/208 (74%), Gaps = 4/208 (2%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCA--G 177981 || || || ||||| || || || || || || |||||||||||||| | ||| | | Sbjct 47829 CAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTCGAGGTTG--AGCCTAGTG 47772 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||| ||||| || || ||||| |||||||| ||||| || || || ||||||| Sbjct 47771 ACACCATTGAGAATGTGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCTGACCAGC 47712 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | || ||||| || || || ||||| ||||||||| | || || | || || ||| Sbjct 47711 AGAGGCTGATCTTTGCTGGGAAGCAGCTGGAAGATGGACGCACCCTGTCTGACTACAACA 47652 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGT 178129 |||| || || || || || || ||||| Sbjct 47651 TCCAGAAGGAGTCCACTCTCCACCTTGT 47624 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1202648704092472