Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Columba_20livia_20[refseq_20GCF_5F000337935.1_202013-02-11]
14,923 sequences; 1,107,989,085 total letters
Query= NC_001266.1
Length=159857
Score E
Sequences producing significant alignments: (Bits) Value
seq243 96.9 4e-15
seq29 89.7 5e-13
>seq243
Length=25666195
Score = 96.9 bits (106), Expect = 4e-15
Identities = 100/131 (76%), Gaps = 0/131 (0%)
Strand=Plus/Minus
Query 16226 TCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGGCATTTTTCCTCGTTTCTTT 16285
|| ||||||||||| |||||||| |||||||| | || |||||| ||| | ||||||
Sbjct 20270010 TCATCTCTGCTGATGAGTTCGTTAGAAAAAGTGAGTCCAGGCATTAATCCCCTTTTCTTC 20269951
Query 16286 AACCAGAATATCGCAGCAAATGACCCCGAAAAGAATATACCCTCAACAGATGCAAAAGCG 16345
| ||| || || | ||||| || || |||||||| || || || || | |||||||||
Sbjct 20269950 AGCCAAAAAATTGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCCACCGCTGCAAAAGCT 20269891
Query 16346 ATTAATCGTTC 16356
| || |||||
Sbjct 20269890 ACTACACGTTC 20269880
>seq29
Length=8961240
Score = 89.7 bits (98), Expect = 5e-13
Identities = 91/119 (76%), Gaps = 0/119 (0%)
Strand=Plus/Minus
Query 16226 TCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGGCATTTTTCCTCGTTTCTTT 16285
|| |||||||| |||||||| ||||| ||||| || || ||||| || | |||||
Sbjct 509567 TCATCTCTGCTAATAAGTTCATTGGAGAAAGTCAATCCAGGCATCAGGCCCCTCTTCTTC 509508
Query 16286 AACCAGAATATCGCAGCAAATGACCCCGAAAAGAATATACCCTCAACAGATGCAAAAGC 16344
| ||| ||||| |||||||| || ||||||||||| || || || || | ||||| ||
Sbjct 509507 AGCCAAAATATAGCAGCAAAGGAACCCGAAAAGAAGATGCCTTCGACTGCAGCAAAGGC 509449
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 511319002036360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |