Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Columba_20livia_20[refseq_20GCF_5F000337935.1_202013-02-11] 14,923 sequences; 1,107,989,085 total letters Query= NC_001350.1 Length=112930 Score E Sequences producing significant alignments: (Bits) Value seq810 102 6e-17 seq682 93.3 3e-14 >seq810 Length=1044949 Score = 102 bits (112), Expect = 6e-17 Identities = 82/99 (83%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 4301 TGCTGAGAACAACATTAATTCTGCCTTTTAAAGGCCGGTTCTTCTCAGGAATTGAGAACC 4360 ||||||| || | |||||| ||| |||||||||| || | |||||||||||| ||||||| Sbjct 263779 TGCTGAGCACTATATTAATCCTGTCTTTTAAAGGACGATGCTTCTCAGGAATGGAGAACC 263838 Query 4361 AAGTCTTTTTACCCATAATCACTAAATTCTGTTTATCTG 4399 | || ||| ||||||| | |||| |||||||||| ||| Sbjct 263839 AGGTTTTTCTACCCATTACCACTGCATTCTGTTTACCTG 263877 >seq682 Length=840739 Score = 93.3 bits (102), Expect = 3e-14 Identities = 110/149 (74%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 102033 CTTTATATTCTGCTCCGAAATGCCTCCACTGAAATCCATACACAGGTCCAAGATCTCCTT 102092 |||| ||||||||||| || ||||||||||| || ||||| || ||||| | ||| || | Sbjct 497127 CTTTGTATTCTGCTCCAAAGTGCCTCCACTGGAAACCATAAACTGGTCCCAAATCCCCCT 497186 Query 102093 CATCTCTGTCATAAAAACCAAGTTTATCTAAAAATGATCTAGATCCATTCGCATCCCAAA 102152 | |||||| ||||| | ||||| | || | |||||||| |||||||||| Sbjct 497187 CCTCTCTGCTGCTGAAACCCTGCTTATCCAGGAACTCACGTGATCCATTAGCATCCCAAA 497246 Query 102153 TGTGCACGCCAGCTGCTGATAGCTCTTTG 102181 | | ||| || ||| || ||||||||| Sbjct 497247 TCTTCACCCCTTTTGCAGAGAGCTCTTTG 497275 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 361185497776673