Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Columba_20livia_20[refseq_20GCF_5F000337935.1_202013-02-11] 14,923 sequences; 1,107,989,085 total letters Query= NC_001731.1 Length=190289 Score E Sequences producing significant alignments: (Bits) Value seq348 165 1e-35 seq1051 113 5e-20 >seq348 Length=3333588 Score = 165 bits (182), Expect = 1e-35 Identities = 187/251 (75%), Gaps = 0/251 (0%) Strand=Plus/Minus Query 83143 GAACTTCTCGAAGTTCCAGGCCACGTCGTTGCGGCACACTGGAGACCAGGCAATGAGCTG 83202 |||||| ||||||||||||| | |||||||||||| || || |||||| |||| ||| Sbjct 1185688 GAACTTTTCGAAGTTCCAGGAGATGTCGTTGCGGCAGACCGGGGACCAGATGATGAACTG 1185629 Query 83203 GGGGTCGCTCACGAGCGTGCTCATGTCGTCGCTAGGCGCCGGCAGGGCCTCTCGTAGGAA 83262 |||| | ||| |||| | | ||||||| || ||||| |||||| ||||| Sbjct 1185628 CGGGTTGGTCATCAGCGAGGACGGGTCGTCGTGCGGGAAGGGCAGCGCCTCTTTCAGGAA 1185569 Query 83263 GGCGAAGAGCGGATGTGCCCTTGCACCGTTGACCTCGCACTTCTCGAAGAGCATAAAGTT 83322 || ||||||||| || || | ||||| ||||||||||||||||| | || || || Sbjct 1185568 GGTGAAGAGCGGGTGCGCGTTCTTCCCGTTCACCTCGCACTTCTCGAACATGATGAAATT 1185509 Query 83323 CGGCTCGAAGCCGTTCCCAGGACGGACGTGCTTCAGGGAAGGCAAGATCTCGGCATTCTG 83382 |||| | | || || |||||||||||||||| ||| || ||| |||||| ||||| Sbjct 1185508 GGGCTTGTACCCCTTGCCAGGACGGACGTGCTCCAGCGACAGCAGGATCTCCTCATTCGT 1185449 Query 83383 GGCGTTTTCCT 83393 || ||||||| Sbjct 1185448 AGCATTTTCCT 1185438 >seq1051 Length=437901 Score = 113 bits (124), Expect = 5e-20 Identities = 222/313 (71%), Gaps = 18/313 (6%) Strand=Plus/Plus Query 83056 GAGCAGGGCCTCGATGTCGGGCTCCACGGCCAGGGTCTGG-CA-GCGGTGGCTGTACCTG 83113 ||| ||| || |||||||||||||| || || ||| || ||| ||||||| | Sbjct 110230 GAGGAGGCGCTGGATGTCGGGCTCCA--GCTGGGCCGTGGGCATGCGCGGGCTGTAGCGT 110287 Query 83114 CGCACGGGCGTGCCGTCAGCACCCACCAAGAACTTCTCGAAGTTCCAGGCCACGTCGTTG 83173 || | || || || | ||||||| ||| |||||||||||||||| | |||| | Sbjct 110288 CGGAAAGGTTCCCCCTCCGGCCCCACCAGGAATTTCTCGAAGTTCCAGGAGATGTCGGAG 110347 Query 83174 CGGCACACTGGAGACCAGGCAATGAGCTGGGGGTCGCTCACGAGCGTGC-TCATGTCGTC 83232 || | ||| || ||||| |||| | |||| ||| ||| || |||| | ||||| Sbjct 110348 CGCCGCACCGGGCTCCAGGTGATGAACCGGGGCTCGGTCATCAG-GTGCGTGGCCTCGTC 110406 Query 83233 -GCTAGGCGCCGGCAGG---GCCTCTCGTAGGAAGGCGAAGAGCGGATG--TGCCCTTGC 83286 ||| || || |||||| |||| || ||| ||||||| | || || || ||| || Sbjct 110407 AGCT-GGTGCGGGCAGGTGAGCCT-TC--AGGTAGGCGAAAACGGGGTGGGTGTCCT-GC 110461 Query 83287 ACCGTTGACCTCGCACTTCTCGAAGAGCATAAAGTTCGGCTCGAAGCCGTTCCCAGGACG 83346 || || |||| |||||||| |||||| | || || |||||||||||| || || || Sbjct 110462 -CCATTCACCTGGCACTTCTGGAAGAGGGTGAAATTGGGCTCGAAGCCGCCACCCGGCCG 110520 Query 83347 GACGTGCTTCAGG 83359 |||||||||||| Sbjct 110521 CACGTGCTTCAGG 110533 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 608683236566920