Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Columba_20livia_20[refseq_20GCF_5F000337935.1_202013-02-11]
14,923 sequences; 1,107,989,085 total letters
Query= NC_001973.1
Length=161046
Score E
Sequences producing significant alignments: (Bits) Value
seq91 145 8e-30
seq12 143 3e-29
seq243 129 6e-25
seq29 87.8 2e-12
>seq91
Length=4318309
Score = 145 bits (160), Expect = 8e-30
Identities = 170/230 (74%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746
|| ||||| || || || || || || || ||||| ||||||||| | || || || ||
Sbjct 4011480 AACATGCAGATCTTTGTCAAGACCCTGACTGGCAAGACCATCACCCTTGAGGTTGAGCCC 4011539
Query 40747 ACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806
| |||| | | | | | |||| || || | ||||| || ||||| ||| | |||
Sbjct 4011540 AGTGACACCATTGAGAATGTGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCAGAC 4011599
Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 40866
||||| | || |||| ||| ||||| |||||||| |||| ||||||||| ||||||
Sbjct 4011600 CAGCAGAGGCTGATCTTCGCTGGCAAGCAGCTGGAAGACGGGCGCACCCTGTCTGACTAC 4011659
Query 40867 AACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916
|||||||||||||| |||| ||||| || ||| ||||| |||| || ||
Sbjct 4011660 AACATCCAGAAGGAATCCACCCTGCACCTGGTGCTGCGCCTGAGAGGTGG 4011709
Score = 140 bits (154), Expect = 3e-28
Identities = 167/227 (74%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
||||| || || || || || || || ||||| ||||||||| |||| || || |||
Sbjct 4011711 ATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTCGAGGTTGAGCCCAGT 4011770
Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809
|||| | | | | | |||| || || | ||||| || ||||| ||| | || |||
Sbjct 4011771 GACACCATTGAGAATGTGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCTGATCAG 4011830
Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869
|| | || || | || ||||| |||||||| |||| ||||||||| |||||||||
Sbjct 4011831 CAGAGGCTGATTTTTGCTGGCAAGCAGCTGGAAGACGGGCGCACCCTGTCTGACTACAAC 4011890
Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916
||||||||||| |||| ||||| || ||| ||||| ||||||| ||
Sbjct 4011891 ATCCAGAAGGAATCCACCCTGCACCTGGTGCTGCGCCTGAGGGGAGG 4011937
Score = 127 bits (140), Expect = 2e-24
Identities = 165/228 (72%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
||||| || || || || || || || ||||| ||||||||| |||| || || |||
Sbjct 4012167 ATGCAGATTTTTGTCAAGACCCTGACTGGCAAGACCATCACCCTCGAGGTTGAGCCCAGT 4012226
Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809
|| | | | | | | |||| || || | ||||| || ||||| ||| | || |||
Sbjct 4012227 GATACCATTGAGAATGTGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCCGATCAG 4012286
Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869
|| | || |||| ||| ||||| |||||||| || | || || || |||||||||
Sbjct 4012287 CAGAGGCTGATCTTCGCTGGCAAGCAGCTGGAAGATGGTCGTACTCTGTCTGACTACAAC 4012346
Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917
||||||||||| |||| ||||| || ||| ||||| ||||||| |||
Sbjct 4012347 ATCCAGAAGGAATCCACCCTGCACCTGGTGCTGCGCCTGAGGGGTGGC 4012394
Score = 127 bits (140), Expect = 2e-24
Identities = 165/228 (72%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
||||| || || || || || || || || || || || || | || || || |||
Sbjct 4012395 ATGCAGATCTTTGTGAAGACCCTGACTGGTAAGACAATTACTCTTGAAGTGGAGCCCAGT 4012454
Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809
|||| | | | | | |||| || || | ||||| || ||||| ||| | ||||||
Sbjct 4012455 GACACCATTGAGAATGTGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCAGACCAG 4012514
Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869
|| | || |||| || ||||| |||||||| |||| ||||||||| |||||||||
Sbjct 4012515 CAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGACGGGCGCACCCTGTCTGACTACAAC 4012574
Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917
||||||||||| |||| ||||| || ||| ||||| ||||||| |||
Sbjct 4012575 ATCCAGAAGGAATCCACCCTGCACCTGGTGCTGCGCCTGAGGGGTGGC 4012622
Score = 114 bits (126), Expect = 1e-20
Identities = 162/228 (71%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748
|||||| || || || || || | || ||||| |||||||| | || || || |||
Sbjct 4011938 AATGCAGATCTTTGTGAAGACCTTGACTGGCAAGACCATCACTCTAGAGGTTGAGCCCAG 4011997
Query 40749 CGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808
|||| | | | | | |||| || || | ||||| || ||||| ||| | || ||
Sbjct 4011998 TGACACCATTGAGAATGTGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCCGATCA 4012057
Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868
||| | || |||| ||| ||||| |||||||| || | || || || ||||||||
Sbjct 4012058 GCAGAGGCTGATCTTCGCTGGCAAGCAGCTGGAAGATGGTCGTACTCTGTCTGACTACAA 4012117
Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916
|||||||||||| | || ||||| || ||| ||||| ||||||| ||
Sbjct 4012118 CATCCAGAAGGAATCTACCCTGCACCTGGTGCTGCGCCTGAGGGGAGG 4012165
>seq12
Length=7699506
Score = 143 bits (158), Expect = 3e-29
Identities = 170/228 (75%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
||||| || || || ||||| || || ||||| ||||||||| | || || || |||
Sbjct 4631223 ATGCAGATCTTTGTGAAAACCCTGACCGGCAAGACCATCACCCTTGAGGTTGAGCCCAGT 4631164
Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808
|||| | | | |||| | |||| || || | ||||| |||||||| ||| | || ||
Sbjct 4631163 GACACCATTGAGAACG-TGAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCTGATCA 4631105
Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868
||| | || || | ||| || || |||||||| || | |||||||| |||||||||
Sbjct 4631104 GCAGAGGCTGATTTTCGCTGGTAAGCAGCTGGAAGATGGTCGCACCCTGTCCGACTACAA 4631045
Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916
||||||||||||| | || |||||||| ||| ||||| | ||||| ||
Sbjct 4631044 CATCCAGAAGGAGTCTACTCTGCATCTCGTGCTGCGCCTCAGGGGTGG 4630997
Score = 129 bits (142), Expect = 6e-25
Identities = 167/228 (73%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
||||| || || || ||||| | || ||||| ||||||||| | || || || |||
Sbjct 4631451 ATGCAGATCTTTGTGAAAACCTTGACTGGCAAGACCATCACCCTTGAGGTTGAGCCCAGT 4631392
Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808
|||| | | | |||| | |||| || || | ||||| |||||||| ||| | || ||
Sbjct 4631391 GACACCATTGAGAACG-TGAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCTGATCA 4631333
Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868
||| | || || | ||| || || |||||||| || | |||||||| |||||||||
Sbjct 4631332 GCAGAGGCTGATTTTCGCTGGTAAGCAGCTGGAAGATGGTCGCACCCTGTCCGACTACAA 4631273
Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916
|||||||||||| |||| || ||||| ||| ||||| | || || ||
Sbjct 4631272 CATCCAGAAGGAATCCACTCTCCATCTCGTGCTGCGCCTCAGAGGAGG 4631225
Score = 129 bits (142), Expect = 6e-25
Identities = 167/231 (72%), Gaps = 0/231 (0%)
Strand=Plus/Minus
Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746
|||||||| || ||||| || || || || ||||| ||||||||| | || || || ||
Sbjct 4631910 AAAATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCCTTGAGGTTGAGCCC 4631851
Query 40747 ACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806
| |||| | | ||| | |||| || || | ||||| |||||||| || | ||
Sbjct 4631850 AGTGACACCATTGAAAATGTGAAGGCCAAGATCCAGGACAAGGAGGGCATTCCTCCTGAT 4631791
Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 40866
||||| | || |||| ||| || || ||||| || || | ||||||||| ||||||
Sbjct 4631790 CAGCAGAGGCTGATCTTCGCTGGTAAGCAGCTCGAAGATGGGCGCACCCTGTCTGACTAC 4631731
Query 40867 AACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917
|||||||||||||| |||| ||||| | ||| | || | ||||| |||
Sbjct 4631730 AACATCCAGAAGGAATCCACCCTGCACTTGGTGCTACGTCTCAGGGGTGGC 4631680
Score = 122 bits (134), Expect = 9e-23
Identities = 166/229 (72%), Gaps = 2/229 (1%)
Strand=Plus/Minus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
||||| || || || ||||| | || ||||| ||||||||| | || || || |||
Sbjct 4631679 ATGCAGATCTTTGTGAAAACCTTGACTGGCAAGACCATCACCCTTGAGGTTGAGCCCAGT 4631620
Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808
|||| | | | |||| | |||| || || | ||||| |||||||| ||| | || ||
Sbjct 4631619 GACACCATTGAGAACG-TGAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCTGATCA 4631561
Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868
||| | || || | ||| || || |||||||| || | |||||||| |||||||||
Sbjct 4631560 GCAGAGGCTGATTTTCGCTGGTAAGCAGCTGGAAGATGGTCGCACCCTGTCCGACTACAA 4631501
Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917
|||||||||||| |||| ||||| | ||| | || | ||||| |||
Sbjct 4631500 CATCCAGAAGGAATCCACCCTGCACTTGGTGCTACGTCTCAGGGGTGGC 4631452
>seq243
Length=25666195
Score = 129 bits (142), Expect = 6e-25
Identities = 97/114 (85%), Gaps = 0/114 (0%)
Strand=Plus/Plus
Query 116576 GAGCCGCTGCTGCGCGAGAACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGAC 116635
|||||||||||||| |||||||||||||||||||| | |||||||| || |||| |||
Sbjct 20266971 GAGCCGCTGCTGCGGGAGAACCCCCGCCGGTTCGTCGTCTTCCCCATCCAGTACCACGAC 20267030
Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTG 116689
|| |||| |||||||| ||||||||||| || |||||||| | |||||||||
Sbjct 20267031 ATCTGGCAGATGTACAAGAAGGCCGAGGCCTCCTTCTGGACGGCGGAGGAGGTG 20267084
>seq29
Length=8961240
Score = 87.8 bits (96), Expect = 2e-12
Identities = 95/126 (75%), Gaps = 0/126 (0%)
Strand=Plus/Plus
Query 117042 TGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTT 117101
|||| ||||| || || ||||| ||| ||||||||||||| || || || |||||||
Sbjct 509444 TGGTTGCCTTTGCTGCAGTCGAAGGCATCTTCTTTTCGGGTTCCTTTGCTGCTATATTTT 509503
Query 117102 GGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGG 117161
|||| ||||| | ||||| ||||| || |||||||| ||| || || || ||| |
Sbjct 509504 GGCTGAAGAAGAGGGGCCTGATGCCTGGATTGACTTTCTCCAATGAACTTATTAGCAGAG 509563
Query 117162 ACGAGG 117167
| ||||
Sbjct 509564 ATGAGG 509569
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 515123092298480
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |