Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Columba_20livia_20[refseq_20GCF_5F000337935.1_202013-02-11] 14,923 sequences; 1,107,989,085 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq91 145 8e-30 seq12 143 3e-29 seq243 129 6e-25 seq29 87.8 2e-12 >seq91 Length=4318309 Score = 145 bits (160), Expect = 8e-30 Identities = 170/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 || ||||| || || || || || || || ||||| ||||||||| | || || || || Sbjct 4011480 AACATGCAGATCTTTGTCAAGACCCTGACTGGCAAGACCATCACCCTTGAGGTTGAGCCC 4011539 Query 40747 ACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806 | |||| | | | | | |||| || || | ||||| || ||||| ||| | ||| Sbjct 4011540 AGTGACACCATTGAGAATGTGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCAGAC 4011599 Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 40866 ||||| | || |||| ||| ||||| |||||||| |||| ||||||||| |||||| Sbjct 4011600 CAGCAGAGGCTGATCTTCGCTGGCAAGCAGCTGGAAGACGGGCGCACCCTGTCTGACTAC 4011659 Query 40867 AACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 |||||||||||||| |||| ||||| || ||| ||||| |||| || || Sbjct 4011660 AACATCCAGAAGGAATCCACCCTGCACCTGGTGCTGCGCCTGAGAGGTGG 4011709 Score = 140 bits (154), Expect = 3e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || || || ||||| ||||||||| |||| || || ||| Sbjct 4011711 ATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTCGAGGTTGAGCCCAGT 4011770 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | | |||| || || | ||||| || ||||| ||| | || ||| Sbjct 4011771 GACACCATTGAGAATGTGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCTGATCAG 4011830 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || | || || | || ||||| |||||||| |||| ||||||||| ||||||||| Sbjct 4011831 CAGAGGCTGATTTTTGCTGGCAAGCAGCTGGAAGACGGGCGCACCCTGTCTGACTACAAC 4011890 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 ||||||||||| |||| ||||| || ||| ||||| ||||||| || Sbjct 4011891 ATCCAGAAGGAATCCACCCTGCACCTGGTGCTGCGCCTGAGGGGAGG 4011937 Score = 127 bits (140), Expect = 2e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || || || ||||| ||||||||| |||| || || ||| Sbjct 4012167 ATGCAGATTTTTGTCAAGACCCTGACTGGCAAGACCATCACCCTCGAGGTTGAGCCCAGT 4012226 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 || | | | | | | |||| || || | ||||| || ||||| ||| | || ||| Sbjct 4012227 GATACCATTGAGAATGTGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCCGATCAG 4012286 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || | || |||| ||| ||||| |||||||| || | || || || ||||||||| Sbjct 4012287 CAGAGGCTGATCTTCGCTGGCAAGCAGCTGGAAGATGGTCGTACTCTGTCTGACTACAAC 4012346 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 ||||||||||| |||| ||||| || ||| ||||| ||||||| ||| Sbjct 4012347 ATCCAGAAGGAATCCACCCTGCACCTGGTGCTGCGCCTGAGGGGTGGC 4012394 Score = 127 bits (140), Expect = 2e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || || || || || || || || | || || || ||| Sbjct 4012395 ATGCAGATCTTTGTGAAGACCCTGACTGGTAAGACAATTACTCTTGAAGTGGAGCCCAGT 4012454 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | | |||| || || | ||||| || ||||| ||| | |||||| Sbjct 4012455 GACACCATTGAGAATGTGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCAGACCAG 4012514 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || | || |||| || ||||| |||||||| |||| ||||||||| ||||||||| Sbjct 4012515 CAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGACGGGCGCACCCTGTCTGACTACAAC 4012574 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 ||||||||||| |||| ||||| || ||| ||||| ||||||| ||| Sbjct 4012575 ATCCAGAAGGAATCCACCCTGCACCTGGTGCTGCGCCTGAGGGGTGGC 4012622 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 |||||| || || || || || | || ||||| |||||||| | || || || ||| Sbjct 4011938 AATGCAGATCTTTGTGAAGACCTTGACTGGCAAGACCATCACTCTAGAGGTTGAGCCCAG 4011997 Query 40749 CGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | | | |||| || || | ||||| || ||||| ||| | || || Sbjct 4011998 TGACACCATTGAGAATGTGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCCGATCA 4012057 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| | || |||| ||| ||||| |||||||| || | || || || |||||||| Sbjct 4012058 GCAGAGGCTGATCTTCGCTGGCAAGCAGCTGGAAGATGGTCGTACTCTGTCTGACTACAA 4012117 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 |||||||||||| | || ||||| || ||| ||||| ||||||| || Sbjct 4012118 CATCCAGAAGGAATCTACCCTGCACCTGGTGCTGCGCCTGAGGGGAGG 4012165 >seq12 Length=7699506 Score = 143 bits (158), Expect = 3e-29 Identities = 170/228 (75%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || ||||| || || ||||| ||||||||| | || || || ||| Sbjct 4631223 ATGCAGATCTTTGTGAAAACCCTGACCGGCAAGACCATCACCCTTGAGGTTGAGCCCAGT 4631164 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| | |||| || || | ||||| |||||||| ||| | || || Sbjct 4631163 GACACCATTGAGAACG-TGAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCTGATCA 4631105 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| | || || | ||| || || |||||||| || | |||||||| ||||||||| Sbjct 4631104 GCAGAGGCTGATTTTCGCTGGTAAGCAGCTGGAAGATGGTCGCACCCTGTCCGACTACAA 4631045 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 ||||||||||||| | || |||||||| ||| ||||| | ||||| || Sbjct 4631044 CATCCAGAAGGAGTCTACTCTGCATCTCGTGCTGCGCCTCAGGGGTGG 4630997 Score = 129 bits (142), Expect = 6e-25 Identities = 167/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || ||||| | || ||||| ||||||||| | || || || ||| Sbjct 4631451 ATGCAGATCTTTGTGAAAACCTTGACTGGCAAGACCATCACCCTTGAGGTTGAGCCCAGT 4631392 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| | |||| || || | ||||| |||||||| ||| | || || Sbjct 4631391 GACACCATTGAGAACG-TGAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCTGATCA 4631333 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| | || || | ||| || || |||||||| || | |||||||| ||||||||| Sbjct 4631332 GCAGAGGCTGATTTTCGCTGGTAAGCAGCTGGAAGATGGTCGCACCCTGTCCGACTACAA 4631273 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 |||||||||||| |||| || ||||| ||| ||||| | || || || Sbjct 4631272 CATCCAGAAGGAATCCACTCTCCATCTCGTGCTGCGCCTCAGAGGAGG 4631225 Score = 129 bits (142), Expect = 6e-25 Identities = 167/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 |||||||| || ||||| || || || || ||||| ||||||||| | || || || || Sbjct 4631910 AAAATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCCTTGAGGTTGAGCCC 4631851 Query 40747 ACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806 | |||| | | ||| | |||| || || | ||||| |||||||| || | || Sbjct 4631850 AGTGACACCATTGAAAATGTGAAGGCCAAGATCCAGGACAAGGAGGGCATTCCTCCTGAT 4631791 Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 40866 ||||| | || |||| ||| || || ||||| || || | ||||||||| |||||| Sbjct 4631790 CAGCAGAGGCTGATCTTCGCTGGTAAGCAGCTCGAAGATGGGCGCACCCTGTCTGACTAC 4631731 Query 40867 AACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 |||||||||||||| |||| ||||| | ||| | || | ||||| ||| Sbjct 4631730 AACATCCAGAAGGAATCCACCCTGCACTTGGTGCTACGTCTCAGGGGTGGC 4631680 Score = 122 bits (134), Expect = 9e-23 Identities = 166/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || ||||| | || ||||| ||||||||| | || || || ||| Sbjct 4631679 ATGCAGATCTTTGTGAAAACCTTGACTGGCAAGACCATCACCCTTGAGGTTGAGCCCAGT 4631620 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| | |||| || || | ||||| |||||||| ||| | || || Sbjct 4631619 GACACCATTGAGAACG-TGAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCTGATCA 4631561 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| | || || | ||| || || |||||||| || | |||||||| ||||||||| Sbjct 4631560 GCAGAGGCTGATTTTCGCTGGTAAGCAGCTGGAAGATGGTCGCACCCTGTCCGACTACAA 4631501 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 |||||||||||| |||| ||||| | ||| | || | ||||| ||| Sbjct 4631500 CATCCAGAAGGAATCCACCCTGCACTTGGTGCTACGTCTCAGGGGTGGC 4631452 >seq243 Length=25666195 Score = 129 bits (142), Expect = 6e-25 Identities = 97/114 (85%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 116576 GAGCCGCTGCTGCGCGAGAACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGAC 116635 |||||||||||||| |||||||||||||||||||| | |||||||| || |||| ||| Sbjct 20266971 GAGCCGCTGCTGCGGGAGAACCCCCGCCGGTTCGTCGTCTTCCCCATCCAGTACCACGAC 20267030 Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTG 116689 || |||| |||||||| ||||||||||| || |||||||| | ||||||||| Sbjct 20267031 ATCTGGCAGATGTACAAGAAGGCCGAGGCCTCCTTCTGGACGGCGGAGGAGGTG 20267084 >seq29 Length=8961240 Score = 87.8 bits (96), Expect = 2e-12 Identities = 95/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 117042 TGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTT 117101 |||| ||||| || || ||||| ||| ||||||||||||| || || || ||||||| Sbjct 509444 TGGTTGCCTTTGCTGCAGTCGAAGGCATCTTCTTTTCGGGTTCCTTTGCTGCTATATTTT 509503 Query 117102 GGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGG 117161 |||| ||||| | ||||| ||||| || |||||||| ||| || || || ||| | Sbjct 509504 GGCTGAAGAAGAGGGGCCTGATGCCTGGATTGACTTTCTCCAATGAACTTATTAGCAGAG 509563 Query 117162 ACGAGG 117167 | |||| Sbjct 509564 ATGAGG 509569 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515123092298480