Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Columba_20livia_20[refseq_20GCF_5F000337935.1_202013-02-11] 14,923 sequences; 1,107,989,085 total letters Query= NC_001987.1 Length=108409 Score E Sequences producing significant alignments: (Bits) Value seq682 98.7 7e-16 >seq682 Length=840739 Score = 98.7 bits (108), Expect = 7e-16 Identities = 117/156 (75%), Gaps = 2/156 (1%) Strand=Plus/Plus Query 97117 GTGACATGGGCGATCATACAAGTTAATAGAGAATAGCTAGCAATGTTAAAAGGCACCCCT 97176 ||||||||||| ||||| | || | || |||||||| ||||| || |||||||| || Sbjct 493811 GTGACATGGGCAATCATGTATGTGAGCAGTGAATAGCTGGCAATATTGAAAGGCACTCCG 493870 Query 97177 AGTCCCATATCAGCTGATCTTTGATATAACTGACAGGAAAGCTTTCCA-TCACACACATA 97235 ||||||||||| |||| || ||||| | ||| || || | || ||| ||||| || || Sbjct 493871 AGTCCCATATCTCCTGACCTCTGATAGAGCTGGCAAGACAACTCACCATTCACA-ACGTA 493929 Query 97236 AAACTGACTCAATACATGACAGGGGGGCAACGCCAT 97271 ||||| | | |||| || || ||||| ||||| Sbjct 493930 GAACTGGCAAAGGGCATGGCATGGAGGCAAAGCCAT 493965 Score = 95.1 bits (104), Expect = 8e-15 Identities = 110/148 (74%), Gaps = 8/148 (5%) Strand=Plus/Plus Query 97402 TATTCTGCTCCAAAATGCCTCCATTGGAATCCATAAACAGGTCCAAGGTCTCCTTCTTCT 97461 |||||||||||||| |||||||| ||||| |||||||| ||||| | || || || ||| Sbjct 497132 TATTCTGCTCCAAAGTGCCTCCACTGGAAACCATAAACTGGTCCCAAATCCCCCTCCTCT 497191 Query 97462 CTATCACAGAAACCAAGCTTATCTAAATAGGACCT----AGATCCATTTGCATCCCAAAT 97517 || | |||||| ||||||| |||| || |||||||| ||||||||||| Sbjct 497192 CTGCTGCTGAAACCCTGCTTATC----CAGGAACTCACGTGATCCATTAGCATCCCAAAT 497247 Query 97518 GTGCACACCAGATGCTGCAAGCTCTTTG 97545 | ||| || ||| | ||||||||| Sbjct 497248 CTTCACCCCTTTTGCAGAGAGCTCTTTG 497275 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 346720928985110