Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Columba_20livia_20[refseq_20GCF_5F000337935.1_202013-02-11]
14,923 sequences; 1,107,989,085 total letters
Query= NC_001987.1
Length=108409
Score E
Sequences producing significant alignments: (Bits) Value
seq682 98.7 7e-16
>seq682
Length=840739
Score = 98.7 bits (108), Expect = 7e-16
Identities = 117/156 (75%), Gaps = 2/156 (1%)
Strand=Plus/Plus
Query 97117 GTGACATGGGCGATCATACAAGTTAATAGAGAATAGCTAGCAATGTTAAAAGGCACCCCT 97176
||||||||||| ||||| | || | || |||||||| ||||| || |||||||| ||
Sbjct 493811 GTGACATGGGCAATCATGTATGTGAGCAGTGAATAGCTGGCAATATTGAAAGGCACTCCG 493870
Query 97177 AGTCCCATATCAGCTGATCTTTGATATAACTGACAGGAAAGCTTTCCA-TCACACACATA 97235
||||||||||| |||| || ||||| | ||| || || | || ||| ||||| || ||
Sbjct 493871 AGTCCCATATCTCCTGACCTCTGATAGAGCTGGCAAGACAACTCACCATTCACA-ACGTA 493929
Query 97236 AAACTGACTCAATACATGACAGGGGGGCAACGCCAT 97271
||||| | | |||| || || ||||| |||||
Sbjct 493930 GAACTGGCAAAGGGCATGGCATGGAGGCAAAGCCAT 493965
Score = 95.1 bits (104), Expect = 8e-15
Identities = 110/148 (74%), Gaps = 8/148 (5%)
Strand=Plus/Plus
Query 97402 TATTCTGCTCCAAAATGCCTCCATTGGAATCCATAAACAGGTCCAAGGTCTCCTTCTTCT 97461
|||||||||||||| |||||||| ||||| |||||||| ||||| | || || || |||
Sbjct 497132 TATTCTGCTCCAAAGTGCCTCCACTGGAAACCATAAACTGGTCCCAAATCCCCCTCCTCT 497191
Query 97462 CTATCACAGAAACCAAGCTTATCTAAATAGGACCT----AGATCCATTTGCATCCCAAAT 97517
|| | |||||| ||||||| |||| || |||||||| |||||||||||
Sbjct 497192 CTGCTGCTGAAACCCTGCTTATC----CAGGAACTCACGTGATCCATTAGCATCCCAAAT 497247
Query 97518 GTGCACACCAGATGCTGCAAGCTCTTTG 97545
| ||| || ||| | |||||||||
Sbjct 497248 CTTCACCCCTTTTGCAGAGAGCTCTTTG 497275
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 346720928985110
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |