Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Columba_20livia_20[refseq_20GCF_5F000337935.1_202013-02-11]
14,923 sequences; 1,107,989,085 total letters
Query= NC_002169.1
Length=135611
Score E
Sequences producing significant alignments: (Bits) Value
seq12 127 2e-24
seq91 114 1e-20
>seq12
Length=7699506
Score = 127 bits (140), Expect = 2e-24
Identities = 154/210 (73%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588
||||||||| | || || || || || |||||||| || || |||||| ||| ||
Sbjct 4631698 CACCAAGTGCAGGGTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTC 4631757
Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648
|||||| || |||||| |||| || | ||||||||| ||||| ||||||||||||||
Sbjct 4631758 GAGCTGCTTACCAGCGAAGATCAGCCTCTGCTGATCAGGAGGAATGCCCTCCTTGTCCTG 4631817
Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708
|| || || || | ||| | |||||| || ||| ||||| | ||| | || ||
Sbjct 4631818 GATCTTGGCCTTCACATTTTCAATGGTGTCACTGGGCTCAACCTCAAGGGTGATGGTCTT 4631877
Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738
||| ||||| || || || || ||||||||
Sbjct 4631878 GCCAGTCAGGGTCTTCACGAAGATCTGCAT 4631907
Score = 122 bits (134), Expect = 8e-23
Identities = 145/197 (74%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601
|||||||| || || |||||||| ||| || ||||| ||| || ||||| || |||
Sbjct 4631027 GTAGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGACCATCTTCCAGCTGCTTACCA 4631086
Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661
||| | || || | ||||||||| || || |||||||||||||| || || ||
Sbjct 4631087 GCGAAAATCAGCCTCTGCTGATCAGGGGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTC 4631146
Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721
|| | || | |||||| || ||| ||||| | ||| | || ||||||||||| |||
Sbjct 4631147 ACGTTCTCAATGGTGTCACTGGGCTCAACCTCAAGGGTGATGGTCTTGCCGGTCAGGGTT 4631206
Query 118722 TTTACAAAAATCTGCAT 118738
|| ||||| ||||||||
Sbjct 4631207 TTCACAAAGATCTGCAT 4631223
Score = 114 bits (126), Expect = 1e-20
Identities = 152/211 (72%), Gaps = 0/211 (0%)
Strand=Plus/Plus
Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588
||||||||| | || || || || || |||||||| ||| || ||||| ||| ||
Sbjct 4631470 CACCAAGTGCAGGGTGGATTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGACCATCTTC 4631529
Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648
||||| || |||||| | || || | ||||||||| || || ||||||||||||||
Sbjct 4631530 CAGCTGCTTACCAGCGAAAATCAGCCTCTGCTGATCAGGGGGAATGCCCTCCTTGTCCTG 4631589
Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708
|| || || || | || | |||||| || ||| ||||| | ||| | || ||
Sbjct 4631590 GATCTTGGCCTTCACGTTCTCAATGGTGTCACTGGGCTCAACCTCAAGGGTGATGGTCTT 4631649
Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCATG 118739
||| |||| ||||| ||||| |||||||||
Sbjct 4631650 GCCAGTCAAGGTTTTCACAAAGATCTGCATG 4631680
Score = 107 bits (118), Expect = 2e-18
Identities = 146/204 (72%), Gaps = 0/204 (0%)
Strand=Plus/Plus
Query 118536 TGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGT 118595
|||| || || || || || |||||||| ||| || ||||| ||| || |||||
Sbjct 4631249 TGGAGAGTGGATTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGACCATCTTCCAGCTGC 4631308
Query 118596 TTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTT 118655
|| |||||| | || || | ||||||||| || || |||||||||||||| || ||
Sbjct 4631309 TTACCAGCGAAAATCAGCCTCTGCTGATCAGGGGGAATGCCCTCCTTGTCCTGGATCTTG 4631368
Query 118656 TGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTC 118715
|| || | || | |||||| || ||| ||||| | ||| | || ||||| |||
Sbjct 4631369 GCCTTCACGTTCTCAATGGTGTCACTGGGCTCAACCTCAAGGGTGATGGTCTTGCCAGTC 4631428
Query 118716 AGAGTTTTTACAAAAATCTGCATG 118739
| ||||| ||||| |||||||||
Sbjct 4631429 AAGGTTTTCACAAAGATCTGCATG 4631452
>seq91
Length=4318309
Score = 114 bits (126), Expect = 1e-20
Identities = 153/213 (72%), Gaps = 0/213 (0%)
Strand=Plus/Minus
Query 118526 CAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATC 118585
|| ||||| ||| | || || || || || |||||||| || || ||| || |||
Sbjct 4012379 CAGCACCAGGTGCAGGGTGGATTCCTTCTGGATGTTGTAGTCAGACAGAGTACGACCATC 4012320
Query 118586 CTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTC 118645
|| ||||| || |||||| |||| || | |||||||||||| || ||||| ||||||||
Sbjct 4012319 TTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGATCGGGGGGAATGCCTTCCTTGTC 4012260
Query 118646 TGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGT 118705
|| || || || | || | ||| || || ||| ||||||| ||| | ||
Sbjct 4012259 CTGGATCTTGGCCTTCACATTCTCAATGGTATCACTGGGCTCAACCTCGAGGGTGATGGT 4012200
Query 118706 TTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738
||||| ||||| || || ||||||||||||||
Sbjct 4012199 CTTGCCAGTCAGGGTCTTGACAAAAATCTGCAT 4012167
Score = 105 bits (116), Expect = 6e-18
Identities = 151/213 (71%), Gaps = 0/213 (0%)
Strand=Plus/Minus
Query 118526 CAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATC 118585
|| ||||| ||| | ||||| || || || |||||||| || || ||| || |||
Sbjct 4012151 CAGCACCAGGTGCAGGGTAGATTCCTTCTGGATGTTGTAGTCAGACAGAGTACGACCATC 4012092
Query 118586 CTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTC 118645
|| ||||| || |||||| |||| || | |||||||||||| || ||||| ||||||||
Sbjct 4012091 TTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGATCGGGGGGAATGCCTTCCTTGTC 4012032
Query 118646 TGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGT 118705
|| || || || | || | |||||| || ||| ||||| | || | ||
Sbjct 4012031 CTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCAACCTCTAGAGTGATGGT 4011972
Query 118706 TTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738
||||| |||| || || ||||| ||||||||
Sbjct 4011971 CTTGCCAGTCAAGGTCTTCACAAAGATCTGCAT 4011939
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 433751497502716
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |