Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Columba_20livia_20[refseq_20GCF_5F000337935.1_202013-02-11]
14,923 sequences; 1,107,989,085 total letters
Query= NC_002665.1
Length=108873
Score E
Sequences producing significant alignments: (Bits) Value
seq510 419 2e-112
seq639 96.9 2e-15
seq294 86.0 4e-12
>seq510
Length=5355126
Score = 419 bits (464), Expect = 2e-112
Identities = 702/1005 (70%), Gaps = 20/1005 (2%)
Strand=Plus/Minus
Query 107628 TACCTCAACATAACCAGAGACTGTGAGCGC-TTCAAGG---CCCAAAGGAAGTTCATACA 107683
|||||||| || || | |||||| ||| ||||||| ||| | || ||||| |
Sbjct 355014 TACCTCAATATGACAAAAGACTGC-AGCAAGTTCAAGGAGACCCGACGG---TTCATCGA 354959
Query 107684 GTTCCCACTGAGTAAAGAAGAGCTAGACTTCCCCATTGCCTACTCGATGGTGGTCCATGA 107743
|||||| ||||| | || ||| |||||| ||||| |||||||| ||||| |||| ||
Sbjct 354958 GTTCCCGCTGAGCCAGGAGGAGGCAGACTTTCCCATCGCCTACTCCATGGTCATCCACGA 354899
Query 107744 GAAGATTGAAAACTTTGAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGAACATATACTG 107803
|| || || | ||||| ||||| ||||| || | || || || |||||| | |||||
Sbjct 354898 CAAAATAGAGATGTTTGAGCGGCTCCTGCGGTCCCTCTACGCTCCCCAGAACGTCTACTG 354839
Query 107804 TGTCCACGTGGATGTGAAGTCCCCAGAGACTTTCAAAGAGGCGGTCAAGGCCATTATTTC 107863
|| ||| | || |||||||| | ||||| | ||||| || |||||| |
Sbjct 354838 CGTTCACATTGACAACAAGTCCCCGGCCGCTTTCCAGGAGGCCGTGCGGGCCATCGCAGC 354779
Query 107864 CTGCTTCCCCAATGTCTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGGTC 107923
|||||||||||||||||| |||| || ||| ||||| ||||||||||||||
Sbjct 354778 CTGCTTCCCCAATGTCTTTGTGGCTAGCCGCCTGGAAAATGTGGTCTATGCCTCCTGGTC 354719
Query 107924 CAGAGTGCAAGCTGACCTGAACTGTATGGAAGACTTGCTCCAGAGCTCAGTGCCATGGAA 107983
| | |||| |||||||| ||||| ||| | ||| |||| |||||| | ||||| ||| |
Sbjct 354718 CCGGCTGCAGGCTGACCTCAACTGCATGCAGGACCTGCTGCAGAGCCCTGTGCCGTGGCA 354659
Query 107984 GTACTTACTGAATACATGCGGGACAGACTTCCCCATAAAGACCAATGCCGAGATGGTCCT 108043
||| | || || || || || || || |||||||| |||||||| |||||||| ||||
Sbjct 354658 ATACATCCTCAACACCTGTGGCACCGATTTCCCCATCAAGACCAACGCCGAGATCGTCCG 354599
Query 108044 GGCCCTCAAGATGTTGAAGGGTAAGAACAGTATGGAGTCTGAGGTACCTTCTGAGTCCaa 108103
|||| || || || |||| ||||||| |||||||||||| || || | ||||
Sbjct 354598 TTCCCTGAAAGTGCTGCAGGGGCAGAACAGCATGGAGTCTGAGAAGCCCTCAGCTGCCAA 354539
Query 108104 aaaaaaTCGCTGGAAATACCGCTATGAGGTGACAGACACACTGTACCCTACCAGCA-AGA 108162
| | |||||| |||| | | | ||| | | | || || | || |||
Sbjct 354538 GCAGCAGCGCTGGCGGTACCACCACAAAGTGGGGAAGTTCATCTCCCGGACAACCACAGA 354479
Query 108163 TGAAGGACCCTCCCCCTGATAATTTACCCATGTTCACAGGGAATGCCTATTTTGTGGCCT 108222
||| || || || | || | ||||||||||| || | || || |||||| |
Sbjct 354478 -GAAACCGCCACCACCCCACAACTCCCCCATGTTCACGGGCAGCGCATACATTGTGGTCA 354420
Query 108223 CTCGAGCCTTTGTCCAACATGTCTTAGACAACCCTAAATCCCAAAGACTGGTTGAATGGG 108282
| || |||||||| || || || || || ||||| | | ||| | | || ||||
Sbjct 354419 CGCGGGCCTTTGTGCAGCACGTTTTCGAGAACCCCACAGTGCAACAGTTCCTCGAGTGGG 354360
Query 108283 TCAAAGACACCTATAGCCCCGACGAACACCTCTGGGCCACCCT--TCAGCGTGCTCCGTG 108340
||| |||||||| ||||| ||||| || ||||||||||||| | || ||| | |||
Sbjct 354359 CCAAGGACACCTACAGCCCTGACGAGCATGTCTGGGCCACCCTCAACCGCATGCCCGGTG 354300
Query 108341 GATGCCTGGCTCTGTTCCTAGCCA---CCCCAAGTATCACATCTCAGACATGACTGCCAT 108397
|||| ||| | | || ||| ||||| || |||| ||||||| ||| |
Sbjct 354299 --TGCCAGGCGCCATGCC---CCAGAGTGACAAGTTCCAGCTCTCGGACATGAACGCCCT 354245
Query 108398 CGCCAGGCTCGTCAAGTGGCAGTACCACGAGGGAGATGTCAGCATGGGGGCGCCTTATGC 108457
|| | || ||||||||||||||| ||||| || ||||| ||| ||||| || |
Sbjct 354244 GCCCCGCCTGGTCAAGTGGCAGTACATGGAGGGCGACACCAGCAAGGGTGCGCCCTACCC 354185
Query 108458 ACCCTGCTCTGGAATCCATCGGAGGGCCATCTGCATTTACGGGGCCGGGGACCTGTACTG 108517
|||||| | || || | | | ||| ||||||| |||||||| || ||| || |||
Sbjct 354184 GCCCTGCACCGGCCAGCACCAGCGCGCCGTCTGCATCTACGGGGCGGGCGACGTGCCCTG 354125
Query 108518 GATTCTCCAGAACCATCACCTCTTGGCAAACAAGTTTGACCCGAGGGTGGATGATAACGT 108577
||| |||||| | || || |||||||| |||||||| ||||| ||||| ||| ||
Sbjct 354124 GATGCTCCAGCAGCACCATCTCTTGGCCAACAAGTTCGACCCCCTCGTGGACGATGCCGC 354065
Query 108578 CCTGCAGTGCTTAGAAGAGTACCTACGTCATAAGGCCATCTATGG 108622
| | |||||| | || |||||||| || || | |||| |||| ||
Sbjct 354064 CATCCAGTGCCTCGAGGAGTACCTGCGACACAGGGCCCTCTACGG 354020
>seq639
Length=5452790
Score = 96.9 bits (106), Expect = 2e-15
Identities = 223/334 (67%), Gaps = 4/334 (1%)
Strand=Plus/Minus
Query 107711 CTTCCCCATTGCCTACTCGATGGTGGTCCATGAGAAGATTGAAAACTTTGAACGGCTGCT 107770
||||||||| |||||| ||| | || || || |||||| |||||| ||||| |
Sbjct 3171974 CTTCCCCATCGCCTACATCATGACTCTGCACAAGGAGTTTGAAACCTTTGAGCGGCTCTT 3171915
Query 107771 GCGAGCCGTGTA--TGCCCCTCAGAACATATACTGTGTCCACGTGGATGTGAAGTCCCCA 107828
| || ||||| |||||| | ||||| ||||| |||||||||| | ||| | ||
Sbjct 3171914 CAGGGCGGTGTACATGCCCC--AAAACATCTACTGCATCCACGTGGACGCCAAGGCACCG 3171857
Query 107829 GAGACTTTCAAAGAGGCGGTCAAGGCCATTATTTCCTGCTTCCCCAATGTCTTCATGGCC 107888
| ||||| | |||| || || | | | |||||||||||||| |||| | |||
Sbjct 3171856 GCCACTTTTCAGCAGGCAGTGCAGCGCCTGGTGGGCTGCTTCCCCAATGCCTTCCTTGCC 3171797
Query 107889 AGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGGTCCAGAGTGCAAGCTGACCTGAACTGT 107948
| ||| | |||||| || || | ||| | ||| || ||||| ||||
Sbjct 3171796 TCCCGGATGGAGCGGGTGGTCTACGCTGGCATCTCCCGCCTGCGGGCCGACCTCCACTGC 3171737
Query 107949 ATGGAAGACTTGCTCCAGAGCTCAGTGCCATGGAAGTACTTACTGAATACATGCGGGACA 108008
||| ||| |||| ||| ||||| ||| ||||| || || || |||||
Sbjct 3171736 ATGAGGGACCTGCTGGCCTCCTCCGTGCCCTGGCGCTACTTGCTCAACACCTGCGGCCAG 3171677
Query 108009 GACTTCCCCATAAAGACCAATGCCGAGATGGTCC 108042
||||||||| | |||||||| ||||| ||||
Sbjct 3171676 GACTTCCCCTTGAAGACCAACCGGGAGATCGTCC 3171643
>seq294
Length=553464
Score = 86.0 bits (94), Expect = 4e-12
Identities = 227/343 (66%), Gaps = 4/343 (1%)
Strand=Plus/Minus
Query 107688 CCACTGAGTAAAGAAGAGCTAGACTTCCCCATTGCCTACTCGATGGTGGTCCATGAGAAG 107747
|| || || || ||||| ||| || || ||||| |||||||| ||||| || | ||
Sbjct 273775 CCTCTCAGCAATGAAGAAGCAGAATTTCCAATTGCTTACTCGATAGTGGTTTATCACAAA 273716
Query 107748 ATTGAAAACTTTGAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGAACATATACTGTGTC 107807
||||| | || || | || || || | | |||||||||||||| | ||||| |
Sbjct 273715 ATTGACATGTTCGATAGACTTCTAAGATCAATCTATGCCCCTCAGAATTTTTACTGCATT 273656
Query 107808 CACGTGGATGTGAAGTCCCCAGAGACTTTCAAAGAGGCGGTCAAGGCCATTATTTCCTGC 107867
|| || || ||||| ||||| |||| | || || |||| || || ||
Sbjct 273655 CATGTTGACAAAAAGTCTCCAGAATCTTTTTTTGCTGCTGTGAAGGGAATAGCCTCGTGT 273596
Query 107868 TTCCCCAATGTCTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGGTCCAGA 107927
|| |||||||| || |||| |||| | || || ||||| || ||| |||
Sbjct 273595 TTTGATAATGTCTTTATTTCCAGCCAGTTAGAAAGTGTTGTATATGCGTCATGGAGCAGG 273536
Query 107928 GTGCAAGCTGACCTGAACTGTATGGAAGACTTGCTCCAGAGCTCAGTGCCA--TGGAAGT 107985
|||||||| ||| | ||||| ||| |||| | || |||| ||| | | ||||| |
Sbjct 273535 GTGCAAGCAGACATTAACTGCATGAAAGA-TCTCTACAGA-AGAAGTTCAAACTGGAAAT 273478
Query 107986 ACTTACTGAATACATGCGGGACAGACTTCCCCATAAAGACCAA 108028
| || | || || || | ||||| || |||||||||||
Sbjct 273477 ATCTAATAAACCTCTGTGGCATGGACTTTCCTATAAAGACCAA 273435
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 348205458938502
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |