Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Columba_20livia_20[refseq_20GCF_5F000337935.1_202013-02-11] 14,923 sequences; 1,107,989,085 total letters Query= NC_002665.1 Length=108873 Score E Sequences producing significant alignments: (Bits) Value seq510 419 2e-112 seq639 96.9 2e-15 seq294 86.0 4e-12 >seq510 Length=5355126 Score = 419 bits (464), Expect = 2e-112 Identities = 702/1005 (70%), Gaps = 20/1005 (2%) Strand=Plus/Minus Query 107628 TACCTCAACATAACCAGAGACTGTGAGCGC-TTCAAGG---CCCAAAGGAAGTTCATACA 107683 |||||||| || || | |||||| ||| ||||||| ||| | || ||||| | Sbjct 355014 TACCTCAATATGACAAAAGACTGC-AGCAAGTTCAAGGAGACCCGACGG---TTCATCGA 354959 Query 107684 GTTCCCACTGAGTAAAGAAGAGCTAGACTTCCCCATTGCCTACTCGATGGTGGTCCATGA 107743 |||||| ||||| | || ||| |||||| ||||| |||||||| ||||| |||| || Sbjct 354958 GTTCCCGCTGAGCCAGGAGGAGGCAGACTTTCCCATCGCCTACTCCATGGTCATCCACGA 354899 Query 107744 GAAGATTGAAAACTTTGAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGAACATATACTG 107803 || || || | ||||| ||||| ||||| || | || || || |||||| | ||||| Sbjct 354898 CAAAATAGAGATGTTTGAGCGGCTCCTGCGGTCCCTCTACGCTCCCCAGAACGTCTACTG 354839 Query 107804 TGTCCACGTGGATGTGAAGTCCCCAGAGACTTTCAAAGAGGCGGTCAAGGCCATTATTTC 107863 || ||| | || |||||||| | ||||| | ||||| || |||||| | Sbjct 354838 CGTTCACATTGACAACAAGTCCCCGGCCGCTTTCCAGGAGGCCGTGCGGGCCATCGCAGC 354779 Query 107864 CTGCTTCCCCAATGTCTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGGTC 107923 |||||||||||||||||| |||| || ||| ||||| |||||||||||||| Sbjct 354778 CTGCTTCCCCAATGTCTTTGTGGCTAGCCGCCTGGAAAATGTGGTCTATGCCTCCTGGTC 354719 Query 107924 CAGAGTGCAAGCTGACCTGAACTGTATGGAAGACTTGCTCCAGAGCTCAGTGCCATGGAA 107983 | | |||| |||||||| ||||| ||| | ||| |||| |||||| | ||||| ||| | Sbjct 354718 CCGGCTGCAGGCTGACCTCAACTGCATGCAGGACCTGCTGCAGAGCCCTGTGCCGTGGCA 354659 Query 107984 GTACTTACTGAATACATGCGGGACAGACTTCCCCATAAAGACCAATGCCGAGATGGTCCT 108043 ||| | || || || || || || || |||||||| |||||||| |||||||| |||| Sbjct 354658 ATACATCCTCAACACCTGTGGCACCGATTTCCCCATCAAGACCAACGCCGAGATCGTCCG 354599 Query 108044 GGCCCTCAAGATGTTGAAGGGTAAGAACAGTATGGAGTCTGAGGTACCTTCTGAGTCCaa 108103 |||| || || || |||| ||||||| |||||||||||| || || | |||| Sbjct 354598 TTCCCTGAAAGTGCTGCAGGGGCAGAACAGCATGGAGTCTGAGAAGCCCTCAGCTGCCAA 354539 Query 108104 aaaaaaTCGCTGGAAATACCGCTATGAGGTGACAGACACACTGTACCCTACCAGCA-AGA 108162 | | |||||| |||| | | | ||| | | | || || | || ||| Sbjct 354538 GCAGCAGCGCTGGCGGTACCACCACAAAGTGGGGAAGTTCATCTCCCGGACAACCACAGA 354479 Query 108163 TGAAGGACCCTCCCCCTGATAATTTACCCATGTTCACAGGGAATGCCTATTTTGTGGCCT 108222 ||| || || || | || | ||||||||||| || | || || |||||| | Sbjct 354478 -GAAACCGCCACCACCCCACAACTCCCCCATGTTCACGGGCAGCGCATACATTGTGGTCA 354420 Query 108223 CTCGAGCCTTTGTCCAACATGTCTTAGACAACCCTAAATCCCAAAGACTGGTTGAATGGG 108282 | || |||||||| || || || || || ||||| | | ||| | | || |||| Sbjct 354419 CGCGGGCCTTTGTGCAGCACGTTTTCGAGAACCCCACAGTGCAACAGTTCCTCGAGTGGG 354360 Query 108283 TCAAAGACACCTATAGCCCCGACGAACACCTCTGGGCCACCCT--TCAGCGTGCTCCGTG 108340 ||| |||||||| ||||| ||||| || ||||||||||||| | || ||| | ||| Sbjct 354359 CCAAGGACACCTACAGCCCTGACGAGCATGTCTGGGCCACCCTCAACCGCATGCCCGGTG 354300 Query 108341 GATGCCTGGCTCTGTTCCTAGCCA---CCCCAAGTATCACATCTCAGACATGACTGCCAT 108397 |||| ||| | | || ||| ||||| || |||| ||||||| ||| | Sbjct 354299 --TGCCAGGCGCCATGCC---CCAGAGTGACAAGTTCCAGCTCTCGGACATGAACGCCCT 354245 Query 108398 CGCCAGGCTCGTCAAGTGGCAGTACCACGAGGGAGATGTCAGCATGGGGGCGCCTTATGC 108457 || | || ||||||||||||||| ||||| || ||||| ||| ||||| || | Sbjct 354244 GCCCCGCCTGGTCAAGTGGCAGTACATGGAGGGCGACACCAGCAAGGGTGCGCCCTACCC 354185 Query 108458 ACCCTGCTCTGGAATCCATCGGAGGGCCATCTGCATTTACGGGGCCGGGGACCTGTACTG 108517 |||||| | || || | | | ||| ||||||| |||||||| || ||| || ||| Sbjct 354184 GCCCTGCACCGGCCAGCACCAGCGCGCCGTCTGCATCTACGGGGCGGGCGACGTGCCCTG 354125 Query 108518 GATTCTCCAGAACCATCACCTCTTGGCAAACAAGTTTGACCCGAGGGTGGATGATAACGT 108577 ||| |||||| | || || |||||||| |||||||| ||||| ||||| ||| || Sbjct 354124 GATGCTCCAGCAGCACCATCTCTTGGCCAACAAGTTCGACCCCCTCGTGGACGATGCCGC 354065 Query 108578 CCTGCAGTGCTTAGAAGAGTACCTACGTCATAAGGCCATCTATGG 108622 | | |||||| | || |||||||| || || | |||| |||| || Sbjct 354064 CATCCAGTGCCTCGAGGAGTACCTGCGACACAGGGCCCTCTACGG 354020 >seq639 Length=5452790 Score = 96.9 bits (106), Expect = 2e-15 Identities = 223/334 (67%), Gaps = 4/334 (1%) Strand=Plus/Minus Query 107711 CTTCCCCATTGCCTACTCGATGGTGGTCCATGAGAAGATTGAAAACTTTGAACGGCTGCT 107770 ||||||||| |||||| ||| | || || || |||||| |||||| ||||| | Sbjct 3171974 CTTCCCCATCGCCTACATCATGACTCTGCACAAGGAGTTTGAAACCTTTGAGCGGCTCTT 3171915 Query 107771 GCGAGCCGTGTA--TGCCCCTCAGAACATATACTGTGTCCACGTGGATGTGAAGTCCCCA 107828 | || ||||| |||||| | ||||| ||||| |||||||||| | ||| | || Sbjct 3171914 CAGGGCGGTGTACATGCCCC--AAAACATCTACTGCATCCACGTGGACGCCAAGGCACCG 3171857 Query 107829 GAGACTTTCAAAGAGGCGGTCAAGGCCATTATTTCCTGCTTCCCCAATGTCTTCATGGCC 107888 | ||||| | |||| || || | | | |||||||||||||| |||| | ||| Sbjct 3171856 GCCACTTTTCAGCAGGCAGTGCAGCGCCTGGTGGGCTGCTTCCCCAATGCCTTCCTTGCC 3171797 Query 107889 AGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGGTCCAGAGTGCAAGCTGACCTGAACTGT 107948 | ||| | |||||| || || | ||| | ||| || ||||| |||| Sbjct 3171796 TCCCGGATGGAGCGGGTGGTCTACGCTGGCATCTCCCGCCTGCGGGCCGACCTCCACTGC 3171737 Query 107949 ATGGAAGACTTGCTCCAGAGCTCAGTGCCATGGAAGTACTTACTGAATACATGCGGGACA 108008 ||| ||| |||| ||| ||||| ||| ||||| || || || ||||| Sbjct 3171736 ATGAGGGACCTGCTGGCCTCCTCCGTGCCCTGGCGCTACTTGCTCAACACCTGCGGCCAG 3171677 Query 108009 GACTTCCCCATAAAGACCAATGCCGAGATGGTCC 108042 ||||||||| | |||||||| ||||| |||| Sbjct 3171676 GACTTCCCCTTGAAGACCAACCGGGAGATCGTCC 3171643 >seq294 Length=553464 Score = 86.0 bits (94), Expect = 4e-12 Identities = 227/343 (66%), Gaps = 4/343 (1%) Strand=Plus/Minus Query 107688 CCACTGAGTAAAGAAGAGCTAGACTTCCCCATTGCCTACTCGATGGTGGTCCATGAGAAG 107747 || || || || ||||| ||| || || ||||| |||||||| ||||| || | || Sbjct 273775 CCTCTCAGCAATGAAGAAGCAGAATTTCCAATTGCTTACTCGATAGTGGTTTATCACAAA 273716 Query 107748 ATTGAAAACTTTGAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGAACATATACTGTGTC 107807 ||||| | || || | || || || | | |||||||||||||| | ||||| | Sbjct 273715 ATTGACATGTTCGATAGACTTCTAAGATCAATCTATGCCCCTCAGAATTTTTACTGCATT 273656 Query 107808 CACGTGGATGTGAAGTCCCCAGAGACTTTCAAAGAGGCGGTCAAGGCCATTATTTCCTGC 107867 || || || ||||| ||||| |||| | || || |||| || || || Sbjct 273655 CATGTTGACAAAAAGTCTCCAGAATCTTTTTTTGCTGCTGTGAAGGGAATAGCCTCGTGT 273596 Query 107868 TTCCCCAATGTCTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGGTCCAGA 107927 || |||||||| || |||| |||| | || || ||||| || ||| ||| Sbjct 273595 TTTGATAATGTCTTTATTTCCAGCCAGTTAGAAAGTGTTGTATATGCGTCATGGAGCAGG 273536 Query 107928 GTGCAAGCTGACCTGAACTGTATGGAAGACTTGCTCCAGAGCTCAGTGCCA--TGGAAGT 107985 |||||||| ||| | ||||| ||| |||| | || |||| ||| | | ||||| | Sbjct 273535 GTGCAAGCAGACATTAACTGCATGAAAGA-TCTCTACAGA-AGAAGTTCAAACTGGAAAT 273478 Query 107986 ACTTACTGAATACATGCGGGACAGACTTCCCCATAAAGACCAA 108028 | || | || || || | ||||| || ||||||||||| Sbjct 273477 ATCTAATAAACCTCTGTGGCATGGACTTTCCTATAAAGACCAA 273435 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 348205458938502