Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Columba_20livia_20[refseq_20GCF_5F000337935.1_202013-02-11] 14,923 sequences; 1,107,989,085 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq91 129 5e-25 seq12 125 6e-24 >seq91 Length=4318309 Score = 129 bits (142), Expect = 5e-25 Identities = 167/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 |||||||||| | | |||| |||||| ||| |||||||| ||||||||||| | Sbjct 4011709 CCACCTCTCAGGCGCAGCACCAGGTGCAGGGTGGATTCCTTCTGGATGTTGTAGTCAGAC 4011650 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 || ||| |||| ||||| || || || ||||| |||| || ||| ||||| || || Sbjct 4011649 AGGGTGCGCCCGTCTTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGGTCTGGGGGA 4011590 Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACC 45289 | || ||||||||| || || ||| || | | | | |||| | ||| ||| Sbjct 4011589 ATGCCTTCCTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCAACC 4011530 Query 45290 TCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCATGTTG 45340 || | ||| || |||||||| ||||| ||||| |||||||| ||||||||| Sbjct 4011529 TCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTGACAAAGATCTGCATGTTG 4011479 Score = 116 bits (128), Expect = 3e-21 Identities = 163/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 45109 GCCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTT 45168 |||||| |||| | | |||| |||||| ||| |||||||| ||||||||||| Sbjct 4012622 GCCACCCCTCAGGCGCAGCACCAGGTGCAGGGTGGATTCCTTCTGGATGTTGTAGTCAGA 4012563 Query 45169 CAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGG 45228 ||| ||| |||| ||||| || || || || || |||| || ||| ||||| || || Sbjct 4012562 CAGGGTGCGCCCGTCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCTGGGGG 4012503 Query 45229 CACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCAC 45288 | || ||||||||| || || ||| || | | | | |||| | |||||| Sbjct 4012502 AATGCCTTCCTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCCAC 4012443 Query 45289 CTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCATG 45337 || | ||||| ||||| || ||||| |||||||||||||| |||||| Sbjct 4012442 TTCAAGAGTAATTGTCTTACCAGTCAGGGTCTTCACAAAGATCTGCATG 4012394 Score = 111 bits (122), Expect = 1e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||| |||||| ||| |||||||| ||||||||||| ||| ||| |||| ||| Sbjct 4011919 ACCAGGTGCAGGGTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCGTCTTCC 4011860 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || || || || || |||| || ||| || || || || | || ||||||||| Sbjct 4011859 AGCTGCTTGCCAGCAAAAATCAGCCTCTGCTGATCAGGGGGAATGCCTTCCTTGTCCTGG 4011800 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | | | |||| | ||| ||||| | ||| || |||||| Sbjct 4011799 ATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCAACCTCGAGGGTGATGGTCTTG 4011740 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || ||||| |||||||||||||| ||||| Sbjct 4011739 CCAGTCAGGGTCTTCACAAAGATCTGCAT 4011711 Score = 105 bits (116), Expect = 5e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 45109 GCCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTT 45168 |||||| |||| | | |||| |||||| ||| |||||||| ||||||||||| Sbjct 4012394 GCCACCCCTCAGGCGCAGCACCAGGTGCAGGGTGGATTCCTTCTGGATGTTGTAGTCAGA 4012335 Query 45169 CAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGG 45228 ||| ||| | || ||||| || || || ||||| |||| || ||| || ||||| || Sbjct 4012334 CAGAGTACGACCATCTTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGATCGGGGGG 4012275 Query 45229 CACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCAC 45288 | || ||||||||| || || ||| || | | | | | || | ||| || Sbjct 4012274 AATGCCTTCCTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTATCACTGGGCTCAAC 4012215 Query 45289 CTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 ||| | ||| || |||||||| ||||| ||||| ||||| || ||||| Sbjct 4012214 CTCGAGGGTGATGGTCTTGCCAGTCAGGGTCTTGACAAAAATCTGCAT 4012167 Score = 102 bits (112), Expect = 6e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||| |||||| || |||||||| ||||||||||| ||| ||| | || ||| Sbjct 4012147 ACCAGGTGCAGGGTAGATTCCTTCTGGATGTTGTAGTCAGACAGAGTACGACCATCTTCC 4012088 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || || || ||||| |||| || ||| || ||||| || | || ||||||||| Sbjct 4012087 AGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGATCGGGGGGAATGCCTTCCTTGTCCTGG 4012028 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | | | |||| | ||| ||||| | || || |||||| Sbjct 4012027 ATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCAACCTCTAGAGTGATGGTCTTG 4011968 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || |||| |||||||||||||| ||||| Sbjct 4011967 CCAGTCAAGGTCTTCACAAAGATCTGCAT 4011939 >seq12 Length=7699506 Score = 125 bits (138), Expect = 6e-24 Identities = 165/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 45109 GCCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTT 45168 |||||| || | | || ||||||||||| ||| |||||||| |||||||||||| Sbjct 4631452 GCCACCCCTGAGACGTAGCACCAAGTGCAGGGTGGATTCCTTCTGGATGTTGTAGTCGGA 4631511 Query 45169 CAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGG 45228 ||| |||| | || ||||| || || || ||||| |||| || ||| || || || || Sbjct 4631512 CAGGGTGCGACCATCTTCCAGCTGCTTACCAGCGAAAATCAGCCTCTGCTGATCAGGGGG 4631571 Query 45229 CACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCAC 45288 | |||||||||||| || || ||| || | | | | |||| | ||| || Sbjct 4631572 AATGCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCACTGGGCTCAAC 4631631 Query 45289 CTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCATG 45337 ||| | ||| || |||||||| |||| || ||||||||||| |||||| Sbjct 4631632 CTCAAGGGTGATGGTCTTGCCAGTCAAGGTTTTCACAAAGATCTGCATG 4631680 Score = 118 bits (130), Expect = 8e-22 Identities = 166/233 (71%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 45109 GCCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTT 45168 |||||| || | | || ||||||||||| ||| |||||||| ||||||||||| Sbjct 4631680 GCCACCCCTGAGACGTAGCACCAAGTGCAGGGTGGATTCCTTCTGGATGTTGTAGTCAGA 4631739 Query 45169 CAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGG 45228 ||| ||| | || || || || || || ||||| |||| || ||| || || ||||| Sbjct 4631740 CAGGGTGCGCCCATCTTCGAGCTGCTTACCAGCGAAGATCAGCCTCTGCTGATCAGGAGG 4631799 Query 45229 CACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCAC 45288 | |||||||||||| || || ||| || | | | |||| | ||| || Sbjct 4631800 AATGCCCTCCTTGTCCTGGATCTTGGCCTTCACATTTTCAATGGTGTCACTGGGCTCAAC 4631859 Query 45289 CTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCATGTTGC 45341 ||| | ||| || |||||||| ||||| |||||||| ||||| ||||| |||| Sbjct 4631860 CTCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCATTTTGC 4631912 Score = 114 bits (126), Expect = 1e-20 Identities = 147/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 45134 TGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGT 45193 ||||| || ||||||||| |||||||||||| ||| |||| | || ||||| || Sbjct 4631021 TGCAGAGTAGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGACCATCTTCCAGCTGC 4631080 Query 45194 TTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTT 45253 || || ||||| |||| || ||| || || || || | |||||||||||| || || Sbjct 4631081 TTACCAGCGAAAATCAGCCTCTGCTGATCAGGGGGAATGCCCTCCTTGTCCTGGATCTTG 4631140 Query 45254 TGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTC 45313 ||| || | | | | |||| | ||| ||||| | ||| || |||||||| ||| Sbjct 4631141 GCCTTCACGTTCTCAATGGTGTCACTGGGCTCAACCTCAAGGGTGATGGTCTTGCCGGTC 4631200 Query 45314 AGAGTCTTCACAAAGATTTGCAT 45336 || || ||||||||||| ||||| Sbjct 4631201 AGGGTTTTCACAAAGATCTGCAT 4631223 Score = 107 bits (118), Expect = 2e-18 Identities = 139/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 45146 TCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAAT 45205 |||||||| |||||||||||| ||| |||| | || ||||| || || || ||||| Sbjct 4631261 TCCTTCTGGATGTTGTAGTCGGACAGGGTGCGACCATCTTCCAGCTGCTTACCAGCGAAA 4631320 Query 45206 ATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCC 45265 |||| || ||| || || || || | |||||||||||| || || ||| || | Sbjct 4631321 ATCAGCCTCTGCTGATCAGGGGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTC 4631380 Query 45266 GCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACA 45325 | | | |||| | ||| ||||| | ||| || |||||||| |||| || |||||| Sbjct 4631381 TCAATGGTGTCACTGGGCTCAACCTCAAGGGTGATGGTCTTGCCAGTCAAGGTTTTCACA 4631440 Query 45326 AAGATTTGCATG 45337 ||||| |||||| Sbjct 4631441 AAGATCTGCATG 4631452 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395003346068383