Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Columba_20livia_20[refseq_20GCF_5F000337935.1_202013-02-11] 14,923 sequences; 1,107,989,085 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq91 100 2e-16 seq12 98.7 8e-16 >seq91 Length=4318309 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 ||||||| || | || |||| ||| || || ||||| || || ||||||||||| | | Sbjct 4012165 CCTCCCCTCAGGCGCAGCACCAGGTGCAGGGTAGATTCCTTCTGGATGTTGTAGTCAGAC 4012106 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | || || |||||||| || ||||| || |||| || || || ||||| ||| Sbjct 4012105 AGAGTACGACCATCTTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGATCGGGGGGA 4012046 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTT 18278 | ||||||||| || || | ||| || | ||| ||||||| |||||| Sbjct 4012045 ATGCCTTCCTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCAACC 4011986 Query 18279 TCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATT 18326 || | |||||| | ||||| ||||| || || ||||| || |||||| Sbjct 4011985 TCTAGAGTGATGGTCTTGCCAGTCAAGGTCTTCACAAAGATCTGCATT 4011938 Score = 95.1 bits (104), Expect = 9e-15 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173 || |||| ||| || || ||||| || || ||||||||||| | || || || |||| Sbjct 4012378 AGCACCAGGTGCAGGGTGGATTCCTTCTGGATGTTGTAGTCAGACAGAGTACGACCATCT 4012319 Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233 |||| || ||||| || |||| || || || ||||| ||| | ||||||||| || Sbjct 4012318 TCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGATCGGGGGGAATGCCTTCCTTGTCC 4012259 Query 18234 GCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTT 18293 || | ||| || | ||| || |||| |||||| || | ||||||| | Sbjct 4012258 TGGATCTTGGCCTTCACATTCTCAATGGTATCACTGGGCTCAACCTCGAGGGTGATGGTC 4012199 Query 18294 TTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 ||||| |||| || || |||||||| ||||| Sbjct 4012198 TTGCCAGTCAGGGTCTTGACAAAAATCTGCAT 4012167 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157 |||||||| || | || |||| ||| || || ||||| || || ||||||||||| | Sbjct 4011938 TCCTCCCCTCAGGCGCAGCACCAGGTGCAGGGTGGATTCCTTCTGGATGTTGTAGTCAGA 4011879 Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217 || || | ||||||| || ||||| ||| | || || || || ||||| ||| Sbjct 4011878 CAGGGTGCGCCCGTCTTCCAGCTGCTTGCCAGCAAAAATCAGCCTCTGCTGATCAGGGGG 4011819 Query 18218 CACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGT 18277 | ||||||||| || || | ||| || | ||| ||||||| |||||| Sbjct 4011818 AATGCCTTCCTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCAAC 4011759 Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 || | ||||||| | ||||| |||| || || ||||| || ||||| Sbjct 4011758 CTCGAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 4011711 Score = 87.8 bits (96), Expect = 1e-12 Identities = 150/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173 || |||| ||| || || ||||| || || ||||||||||| | || || | ||| Sbjct 4011694 AGCACCAGGTGCAGGGTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCGTCT 4011635 Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233 |||| || ||||| || |||| || || || || || ||| | ||||||||| || Sbjct 4011634 TCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGGTCTGGGGGAATGCCTTCCTTGTCC 4011575 Query 18234 GCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTT 18293 || | ||| || | ||| ||||||| |||||| |||| ||||||| | Sbjct 4011574 TGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCAACCTCAAGGGTGATGGTC 4011515 Query 18294 TTGCCGGTCAATGTTTTTACAAAAATTTGCATTTTTAA 18331 ||||| |||| || || ||||| || ||||| || || Sbjct 4011514 TTGCCAGTCAGGGTCTTGACAAAGATCTGCATGTTGAA 4011477 >seq12 Length=7699506 Score = 98.7 bits (108), Expect = 8e-16 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173 || |||| ||| || || ||||| || || ||||||||||||| || || || |||| Sbjct 4631468 AGCACCAAGTGCAGGGTGGATTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGACCATCT 4631527 Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233 |||| || || || || | || || || || ||||| ||| | ||| ||||| || Sbjct 4631528 TCCAGCTGCTTACCAGCGAAAATCAGCCTCTGCTGATCAGGGGGAATGCCCTCCTTGTCC 4631587 Query 18234 GCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTT 18293 || | ||| || | ||| ||||||| |||||| |||| ||||||| | Sbjct 4631588 TGGATCTTGGCCTTCACGTTCTCAATGGTGTCACTGGGCTCAACCTCAAGGGTGATGGTC 4631647 Query 18294 TTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 ||||| ||||| ||||| ||||| || ||||| Sbjct 4631648 TTGCCAGTCAAGGTTTTCACAAAGATCTGCAT 4631679 Score = 91.5 bits (100), Expect = 1e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 18123 TGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGT 18182 || || || ||||| || || ||||||||||||| || || || |||||||| || Sbjct 4631249 TGGAGAGTGGATTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGACCATCTTCCAGCTGC 4631308 Query 18183 TTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGT 18242 || || || | || || || || ||||| ||| | ||| ||||| || || | Sbjct 4631309 TTACCAGCGAAAATCAGCCTCTGCTGATCAGGGGGAATGCCCTCCTTGTCCTGGATCTTG 4631368 Query 18243 TGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGTC 18302 ||| || | ||| ||||||| |||||| |||| ||||||| | ||||| ||| Sbjct 4631369 GCCTTCACGTTCTCAATGGTGTCACTGGGCTCAACCTCAAGGGTGATGGTCTTGCCAGTC 4631428 Query 18303 AATGTTTTTACAAAAATTTGCAT 18325 || ||||| ||||| || ||||| Sbjct 4631429 AAGGTTTTCACAAAGATCTGCAT 4631451 Score = 87.8 bits (96), Expect = 1e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 18123 TGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGT 18182 || || || || || || || ||||||||||||| || || || |||||||| || Sbjct 4631021 TGCAGAGTAGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGACCATCTTCCAGCTGC 4631080 Query 18183 TTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGT 18242 || || || | || || || || ||||| ||| | ||| ||||| || || | Sbjct 4631081 TTACCAGCGAAAATCAGCCTCTGCTGATCAGGGGGAATGCCCTCCTTGTCCTGGATCTTG 4631140 Query 18243 TGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGTC 18302 ||| || | ||| ||||||| |||||| |||| ||||||| | ||||||||| Sbjct 4631141 GCCTTCACGTTCTCAATGGTGTCACTGGGCTCAACCTCAAGGGTGATGGTCTTGCCGGTC 4631200 Query 18303 AATGTTTTTACAAAAATTTGCAT 18325 | ||||| ||||| || ||||| Sbjct 4631201 AGGGTTTTCACAAAGATCTGCAT 4631223 Score = 82.4 bits (90), Expect = 6e-11 Identities = 147/215 (68%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173 || |||| ||| || || ||||| || || ||||||||||| | || || | |||| Sbjct 4631696 AGCACCAAGTGCAGGGTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCT 4631755 Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233 || | || || || || |||| || || || ||||| || | ||| ||||| || Sbjct 4631756 TCGAGCTGCTTACCAGCGAAGATCAGCCTCTGCTGATCAGGAGGAATGCCCTCCTTGTCC 4631815 Query 18234 GCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTT 18293 || | ||| || | | ||| ||||||| |||||| |||| ||||||| | Sbjct 4631816 TGGATCTTGGCCTTCACATTTTCAATGGTGTCACTGGGCTCAACCTCAAGGGTGATGGTC 4631875 Query 18294 TTGCCGGTCAATGTTTTTACAAAAATTTGCATTTT 18328 ||||| |||| || || || || || |||||||| Sbjct 4631876 TTGCCAGTCAGGGTCTTCACGAAGATCTGCATTTT 4631910 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379275007165635