Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Columba_20livia_20[refseq_20GCF_5F000337935.1_202013-02-11]
14,923 sequences; 1,107,989,085 total letters
Query= NC_003529.1
Length=155060
Score E
Sequences producing significant alignments: (Bits) Value
seq12 111 2e-19
seq91 86.0 6e-12
>seq12
Length=7699506
Score = 111 bits (122), Expect = 2e-19
Identities = 150/209 (72%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 139556 ACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCG 139615
|| ||||| | || || || || || ||||| || || || |||| | ||||||
Sbjct 4631699 ACCAAGTGCAGGGTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCG 4631758
Query 139616 AGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTG 139675
||||| |||||||| ||||||| | |||||||| ||||| ||||| || ||||| |
Sbjct 4631759 AGCTGCTTACCAGCGAAGATCAGCCTCTGCTGATCAGGAGGAATGCCCTCCTTGTCCTGG 4631818
Query 139676 ATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTG 139735
|| || || | | ||| | ||||| ||||||| ||||||| ||| | ||||||
Sbjct 4631819 ATCTTGGCCTTCACATTTTCAATGGTGTCACTGGGCTCAACCTCAAGGGTGATGGTCTTG 4631878
Query 139736 CCGGTCAACGTTTTTACGAATATTTGCAT 139764
|| |||| || || ||||| || |||||
Sbjct 4631879 CCAGTCAGGGTCTTCACGAAGATCTGCAT 4631907
Score = 104 bits (114), Expect = 2e-17
Identities = 141/197 (72%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627
|||||||| || || ||||| || ||| || |||| ||||| ||||| ||||||
Sbjct 4631027 GTAGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGACCATCTTCCAGCTGCTTACCA 4631086
Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687
|| | ||||| | |||||||| || || ||||| || ||||| ||| || ||
Sbjct 4631087 GCGAAAATCAGCCTCTGCTGATCAGGGGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTC 4631146
Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747
| | || | ||||| ||||||| ||||||| ||| | ||||||||||||| |||
Sbjct 4631147 ACGTTCTCAATGGTGTCACTGGGCTCAACCTCAAGGGTGATGGTCTTGCCGGTCAGGGTT 4631206
Query 139748 TTTACGAATATTTGCAT 139764
|| || || || |||||
Sbjct 4631207 TTCACAAAGATCTGCAT 4631223
>seq91
Length=4318309
Score = 86.0 bits (94), Expect = 6e-12
Identities = 112/155 (72%), Gaps = 0/155 (0%)
Strand=Plus/Minus
Query 139610 TCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 139669
||||| ||||| || ||||| ||||||| | ||||||||||| || |||||||| |||
Sbjct 4012093 TCTTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGATCGGGGGGAATGCCTTCCTTG 4012034
Query 139670 TCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACC 139729
|| ||| || || | | || | ||||| ||||||| ||||| | || |
Sbjct 4012033 TCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCAACCTCTAGAGTGATG 4011974
Query 139730 GTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764
|||||||| ||||| || || || || || |||||
Sbjct 4011973 GTCTTGCCAGTCAAGGTCTTCACAAAGATCTGCAT 4011939
Score = 82.4 bits (90), Expect = 8e-11
Identities = 111/155 (72%), Gaps = 0/155 (0%)
Strand=Plus/Minus
Query 139610 TCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 139669
||||| ||||| || ||||| ||||||| | ||||||||||| || |||||||| |||
Sbjct 4012321 TCTTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGATCGGGGGGAATGCCTTCCTTG 4012262
Query 139670 TCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACC 139729
|| ||| || || | | || | || || ||||||| ||||| | ||| |
Sbjct 4012261 TCCTGGATCTTGGCCTTCACATTCTCAATGGTATCACTGGGCTCAACCTCGAGGGTGATG 4012202
Query 139730 GTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764
|||||||| |||| || || || || || |||||
Sbjct 4012201 GTCTTGCCAGTCAGGGTCTTGACAAAAATCTGCAT 4012167
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 495971465461600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |