Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Columba_20livia_20[refseq_20GCF_5F000337935.1_202013-02-11] 14,923 sequences; 1,107,989,085 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq29 129 8e-25 seq243 116 5e-21 seq266 87.8 3e-12 >seq29 Length=8961240 Score = 129 bits (142), Expect = 8e-25 Identities = 110/136 (81%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 49982 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 50041 |||| ||||| ||||| ||||| ||||| || || | ||| ||||| ||||| | ||| | Sbjct 509569 CCTCATCTCTGCTAATAAGTTCATTGGAGAAAGTCAATCCAGGCATCAGGCCCCTCTTCT 509510 Query 50042 TAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGG 50101 | ||||||||||| | ||||| || || ||||||||||| ||||| ||||| ||||||| Sbjct 509509 TCAGCCAAAATATAGCAGCAAAGGAACCCGAAAAGAAGATGCCTTCGACTGCAGCAAAGG 509450 Query 50102 CAACAAGTCTCTCTCC 50117 |||| | |||||| || Sbjct 509449 CAACCACTCTCTCCCC 509434 >seq243 Length=25666195 Score = 116 bits (128), Expect = 5e-21 Identities = 100/124 (81%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 49982 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 50041 |||| ||||| || || |||||||| ||||| |||||||| ||||||| || | || | Sbjct 20270012 CCTCATCTCTGCTGATGAGTTCGTTAGAAAAAGTGAGTCCAGGCATTAATCCCCTTTTCT 20269953 Query 50042 TAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGG 50101 | |||||||| || || ||||| || |||||||||||||||||||| || || ||||| | Sbjct 20269952 TCAGCCAAAAAATTGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCCACCGCTGCAAAAG 20269893 Query 50102 CAAC 50105 | || Sbjct 20269892 CTAC 20269889 >seq266 Length=585698 Score = 87.8 bits (96), Expect = 3e-12 Identities = 101/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 78785 TCCATCCGTAGAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 78844 |||| |||||||| ||||| || || |||||| || | || || || || ||||| | Sbjct 274864 TCCAGCCGTAGAAGTGCATGCTGGTGAGTTTGCCGTAGTTGGGCTCGGCGATGTGGATGT 274805 Query 78845 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 78904 | | || || || || |||||||||||||| ||||| || ||||| || | ||| |||| Sbjct 274804 TGAGGGACTGGCTCTGGTCGATGAAGGCTCCTCTGTCCGCTGCCATCTTCAGGATGGTCT 274745 Query 78905 TTTGTGGAATTTCCCA 78920 | || | || ||||| Sbjct 274744 TCTGGGAGATCTCCCA 274729 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718134815933720