Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Columba_20livia_20[refseq_20GCF_5F000337935.1_202013-02-11] 14,923 sequences; 1,107,989,085 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq266 89.7 8e-13 seq29 84.2 3e-11 >seq266 Length=585698 Score = 89.7 bits (98), Expect = 8e-13 Identities = 88/114 (77%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 97209 GAGACTGGAACTCCGTACATTCTCTACAAGGATACCGTGAATCGCAACAGCAACCAACGC 97268 ||||| || || |||||||| || ||||| || || || ||||| |||||||| | Sbjct 268087 GAGACCGGCACGCCGTACATGCTGTACAAAGACGCCTGCAACCGCAAGAGCAACCAGCAG 268146 Query 97269 CACTTGGGCACCATCAAGGGCTCCAATCTGTGCACGGAAATTGTAGAGTACGCC 97322 || |||||||||||||| || ||| ||||||||||| || || |||||| || Sbjct 268147 AACCTGGGCACCATCAAGTGCAGCAACCTGTGCACGGAGATCGTGGAGTACACC 268200 >seq29 Length=8961240 Score = 84.2 bits (92), Expect = 3e-11 Identities = 79/101 (78%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 125421 GACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCC 125480 || ||| |||| || || || || || || |||||||||||||||||| ||||| || Sbjct 509437 GAGAGAGTGGTTGCCTTTGCTGCAGTCGAAGGCATCTTCTTTTCGGGTTCCTTTGCTGCT 509496 Query 125481 ATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGAC 125521 || |||||||| |||||| | || || ||||| ||| |||| Sbjct 509497 ATATTTTGGCTGAAGAAGAGGGGCCTGATGCCTGGATTGAC 509537 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 740920964669480