Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Columba_20livia_20[refseq_20GCF_5F000337935.1_202013-02-11]
14,923 sequences; 1,107,989,085 total letters
Query= NC_004156.2
Length=231621
Score E
Sequences producing significant alignments: (Bits) Value
seq266 89.7 8e-13
seq29 84.2 3e-11
>seq266
Length=585698
Score = 89.7 bits (98), Expect = 8e-13
Identities = 88/114 (77%), Gaps = 0/114 (0%)
Strand=Plus/Plus
Query 97209 GAGACTGGAACTCCGTACATTCTCTACAAGGATACCGTGAATCGCAACAGCAACCAACGC 97268
||||| || || |||||||| || ||||| || || || ||||| |||||||| |
Sbjct 268087 GAGACCGGCACGCCGTACATGCTGTACAAAGACGCCTGCAACCGCAAGAGCAACCAGCAG 268146
Query 97269 CACTTGGGCACCATCAAGGGCTCCAATCTGTGCACGGAAATTGTAGAGTACGCC 97322
|| |||||||||||||| || ||| ||||||||||| || || |||||| ||
Sbjct 268147 AACCTGGGCACCATCAAGTGCAGCAACCTGTGCACGGAGATCGTGGAGTACACC 268200
>seq29
Length=8961240
Score = 84.2 bits (92), Expect = 3e-11
Identities = 79/101 (78%), Gaps = 0/101 (0%)
Strand=Plus/Plus
Query 125421 GACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCC 125480
|| ||| |||| || || || || || || |||||||||||||||||| ||||| ||
Sbjct 509437 GAGAGAGTGGTTGCCTTTGCTGCAGTCGAAGGCATCTTCTTTTCGGGTTCCTTTGCTGCT 509496
Query 125481 ATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGAC 125521
|| |||||||| |||||| | || || ||||| ||| ||||
Sbjct 509497 ATATTTTGGCTGAAGAAGAGGGGCCTGATGCCTGGATTGAC 509537
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 740920964669480
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |