Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Columba_20livia_20[refseq_20GCF_5F000337935.1_202013-02-11]
14,923 sequences; 1,107,989,085 total letters
Query= NC_005309.1
Length=359853
Score E
Sequences producing significant alignments: (Bits) Value
seq91 167 5e-36
seq12 156 1e-32
seq243 154 3e-32
seq29 118 2e-21
>seq91
Length=4318309
Score = 167 bits (184), Expect = 5e-36
Identities = 175/230 (76%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389
||||| || || || | || || || || | || ||||| ||||| || || ||||||
Sbjct 4011940 ATTCCTCCCCTCAGGCGCAGCACCAGGTGCAGGGTGGATTCCTTCTGGATGTTGTAGTCA 4011881
Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449
|| || || | |||||||| || || || ||||||||||| |||||||| ||||||||
Sbjct 4011880 GACAGGGTGCGCCCGTCTTCCAGCTGCTTGCCAGCAAAAATCAGCCTCTGCTGATCAGGG 4011821
Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509
|| || ||||| || ||||| ||||| || || ||||| || | ||| || || || ||
Sbjct 4011820 GGAATGCCTTCCTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCA 4011761
Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559
||||| || || || ||||| ||||| || || || ||||| ||||||||
Sbjct 4011760 ACCTCGAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 4011711
Score = 152 bits (168), Expect = 1e-31
Identities = 152/197 (77%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422
|| ||||| ||||| || || |||||||| || || | |||||||| || || || |||
Sbjct 4012591 GTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCGTCTTCCAGCTGCTTGCCA 4012532
Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482
||||| || |||||||| || || || || || ||||| || ||||| ||||| || ||
Sbjct 4012531 GCAAAGATCAGCCTCTGCTGGTCTGGGGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTC 4012472
Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542
||||| || | ||| || || || || || || || ||||| ||||||||||| || ||
Sbjct 4012471 ACATTCTCAATGGTGTCACTGGGCTCCACTTCAAGAGTAATTGTCTTACCAGTCAGGGTC 4012412
Query 104543 TTTACAAATATCTGCAT 104559
|| ||||| ||||||||
Sbjct 4012411 TTCACAAAGATCTGCAT 4012395
>seq12
Length=7699506
Score = 156 bits (172), Expect = 1e-32
Identities = 155/201 (77%), Gaps = 0/201 (0%)
Strand=Plus/Plus
Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422
|| ||||| ||||| || || |||||||| || || | || ||||| || || || |||
Sbjct 4631711 GTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCGAGCTGCTTACCA 4631770
Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482
|| || || |||||||| ||||||||||| || || || || ||||| ||||| || ||
Sbjct 4631771 GCGAAGATCAGCCTCTGCTGATCAGGAGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTC 4631830
Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542
|||||||| | ||| || || || || ||||| || || || ||||| ||||| || ||
Sbjct 4631831 ACATTTTCAATGGTGTCACTGGGCTCAACCTCAAGGGTGATGGTCTTGCCAGTCAGGGTC 4631890
Query 104543 TTTACAAATATCTGCATTTTG 104563
|| || || ||||||||||||
Sbjct 4631891 TTCACGAAGATCTGCATTTTG 4631911
>seq243
Length=25666195
Score = 154 bits (170), Expect = 3e-32
Identities = 132/163 (81%), Gaps = 0/163 (0%)
Strand=Plus/Plus
Query 78488 GCATTATGGTGGTATTATATCTCTAAAGGAATAGAATACCTAGATACTATCTTCTTCATC 78547
|||||||||||||||||| ||||||||||||| ||||| | ||||| | |||||||||
Sbjct 1803639 GCATTATGGTGGTATTATGTCTCTAAAGGAATTGAATATTTGGATACAGTATTCTTCATC 1803698
Query 78548 CTACGAAAGAAATTTAATCAAATTAGTTTTCTACATGTATATCATCATTTTACTATGTTT 78607
| | ||||||||||| ||||| ||||| || || || ||||| ||||| || ||||||
Sbjct 1803699 TTGAGGAAGAAATTTAACCAAATCAGTTTCCTTCACGTCTATCACCATTTCACCATGTTT 1803758
Query 78608 ACTTTGGGATGGATAGGTATTAAATGGTTCGCAGGAGGACAAG 78650
|| ||| | ||||| |||||||| ||| | || || || ||||
Sbjct 1803759 ACCTTGTGGTGGATTGGTATTAAGTGGGTTGCCGGTGGCCAAG 1803801
>seq29
Length=8961240
Score = 118 bits (130), Expect = 2e-21
Identities = 107/134 (80%), Gaps = 2/134 (1%)
Strand=Plus/Plus
Query 269126 GGAGAAAGGTTAGTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCC 269185
||||| || | ||||| ||||| || || ||||| || ||||||||||| || |||||
Sbjct 509436 GGAGAGAG--TGGTTGCCTTTGCTGCAGTCGAAGGCATCTTCTTTTCGGGTTCCTTTGCT 509493
Query 269186 GCTATCTTTTGGTTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTG 269245
||||| |||||| ||||||| || ||||| ||||| ||||| |||||||| || ||| |
Sbjct 509494 GCTATATTTTGGCTGAAGAAGAGGGGCCTGATGCCTGGATTGACTTTCTCCAATGAACTT 509553
Query 269246 ATAAGCAGGGACGA 269259
|| ||||| || ||
Sbjct 509554 ATTAGCAGAGATGA 509567
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1151178251546484
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |