Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Columba_20livia_20[refseq_20GCF_5F000337935.1_202013-02-11] 14,923 sequences; 1,107,989,085 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq91 167 5e-36 seq12 156 1e-32 seq243 154 3e-32 seq29 118 2e-21 >seq91 Length=4318309 Score = 167 bits (184), Expect = 5e-36 Identities = 175/230 (76%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 ||||| || || || | || || || || | || ||||| ||||| || || |||||| Sbjct 4011940 ATTCCTCCCCTCAGGCGCAGCACCAGGTGCAGGGTGGATTCCTTCTGGATGTTGTAGTCA 4011881 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || || || | |||||||| || || || ||||||||||| |||||||| |||||||| Sbjct 4011880 GACAGGGTGCGCCCGTCTTCCAGCTGCTTGCCAGCAAAAATCAGCCTCTGCTGATCAGGG 4011821 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || ||||| || ||||| ||||| || || ||||| || | ||| || || || || Sbjct 4011820 GGAATGCCTTCCTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCA 4011761 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||||| || || || ||||| ||||| || || || ||||| |||||||| Sbjct 4011760 ACCTCGAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 4011711 Score = 152 bits (168), Expect = 1e-31 Identities = 152/197 (77%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || ||||| ||||| || || |||||||| || || | |||||||| || || || ||| Sbjct 4012591 GTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCGTCTTCCAGCTGCTTGCCA 4012532 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 ||||| || |||||||| || || || || || ||||| || ||||| ||||| || || Sbjct 4012531 GCAAAGATCAGCCTCTGCTGGTCTGGGGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTC 4012472 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 ||||| || | ||| || || || || || || || ||||| ||||||||||| || || Sbjct 4012471 ACATTCTCAATGGTGTCACTGGGCTCCACTTCAAGAGTAATTGTCTTACCAGTCAGGGTC 4012412 Query 104543 TTTACAAATATCTGCAT 104559 || ||||| |||||||| Sbjct 4012411 TTCACAAAGATCTGCAT 4012395 >seq12 Length=7699506 Score = 156 bits (172), Expect = 1e-32 Identities = 155/201 (77%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || ||||| ||||| || || |||||||| || || | || ||||| || || || ||| Sbjct 4631711 GTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCGAGCTGCTTACCA 4631770 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || || || |||||||| ||||||||||| || || || || ||||| ||||| || || Sbjct 4631771 GCGAAGATCAGCCTCTGCTGATCAGGAGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTC 4631830 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 |||||||| | ||| || || || || ||||| || || || ||||| ||||| || || Sbjct 4631831 ACATTTTCAATGGTGTCACTGGGCTCAACCTCAAGGGTGATGGTCTTGCCAGTCAGGGTC 4631890 Query 104543 TTTACAAATATCTGCATTTTG 104563 || || || |||||||||||| Sbjct 4631891 TTCACGAAGATCTGCATTTTG 4631911 >seq243 Length=25666195 Score = 154 bits (170), Expect = 3e-32 Identities = 132/163 (81%), Gaps = 0/163 (0%) Strand=Plus/Plus Query 78488 GCATTATGGTGGTATTATATCTCTAAAGGAATAGAATACCTAGATACTATCTTCTTCATC 78547 |||||||||||||||||| ||||||||||||| ||||| | ||||| | ||||||||| Sbjct 1803639 GCATTATGGTGGTATTATGTCTCTAAAGGAATTGAATATTTGGATACAGTATTCTTCATC 1803698 Query 78548 CTACGAAAGAAATTTAATCAAATTAGTTTTCTACATGTATATCATCATTTTACTATGTTT 78607 | | ||||||||||| ||||| ||||| || || || ||||| ||||| || |||||| Sbjct 1803699 TTGAGGAAGAAATTTAACCAAATCAGTTTCCTTCACGTCTATCACCATTTCACCATGTTT 1803758 Query 78608 ACTTTGGGATGGATAGGTATTAAATGGTTCGCAGGAGGACAAG 78650 || ||| | ||||| |||||||| ||| | || || || |||| Sbjct 1803759 ACCTTGTGGTGGATTGGTATTAAGTGGGTTGCCGGTGGCCAAG 1803801 >seq29 Length=8961240 Score = 118 bits (130), Expect = 2e-21 Identities = 107/134 (80%), Gaps = 2/134 (1%) Strand=Plus/Plus Query 269126 GGAGAAAGGTTAGTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCC 269185 ||||| || | ||||| ||||| || || ||||| || ||||||||||| || ||||| Sbjct 509436 GGAGAGAG--TGGTTGCCTTTGCTGCAGTCGAAGGCATCTTCTTTTCGGGTTCCTTTGCT 509493 Query 269186 GCTATCTTTTGGTTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTG 269245 ||||| |||||| ||||||| || ||||| ||||| ||||| |||||||| || ||| | Sbjct 509494 GCTATATTTTGGCTGAAGAAGAGGGGCCTGATGCCTGGATTGACTTTCTCCAATGAACTT 509553 Query 269246 ATAAGCAGGGACGA 269259 || ||||| || || Sbjct 509554 ATTAGCAGAGATGA 509567 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151178251546484