Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Columba_20livia_20[refseq_20GCF_5F000337935.1_202013-02-11] 14,923 sequences; 1,107,989,085 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq519 89.7 3e-13 seq233 84.2 1e-11 seq371 82.4 4e-11 seq215 82.4 4e-11 >seq519 Length=23630376 Score = 89.7 bits (98), Expect = 3e-13 Identities = 69/82 (84%), Gaps = 2/82 (2%) Strand=Plus/Minus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| || Sbjct 23363285 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 23363226 Query 11528 CCGTCGACGATTGTGATTTTTC 11549 || ||||||| || ||||| Sbjct 23363225 CC--CGACGATGATGTCTTTTC 23363206 Score = 86.0 bits (94), Expect = 3e-12 Identities = 72/88 (82%), Gaps = 2/88 (2%) Strand=Plus/Minus Query 11444 AAAAAATCAA--ATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACG 11501 ||||||| || | |||||| | |||||||||| ||||||| ||||||||||||| Sbjct 23361828 AAAAAATGAATGAATGGCCCGTACGGGGATCGAACCCGCGACCTTGGCGTTATTAGCACC 23361769 Query 11502 ACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||| |||||||||||||| |||| Sbjct 23361768 ACGCTCTAACCAACTGAGCTAACCGGCC 23361741 Score = 84.2 bits (92), Expect = 1e-11 Identities = 72/89 (81%), Gaps = 2/89 (2%) Strand=Plus/Minus Query 11441 AATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500 || ||||| | || |||||| | |||||||||| ||||||| ||||||||||||| Sbjct 23377467 AAGAAAAACTGAA--TGGCCCGTACGGGGATCGAACCCGCGACCTTGGCGTTATTAGCAC 23377410 Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||| |||||||||||||| |||| Sbjct 23377409 CACGCTCTAACCAACTGAGCTAACCGGCC 23377381 >seq233 Length=2717377 Score = 84.2 bits (92), Expect = 1e-11 Identities = 70/85 (82%), Gaps = 1/85 (1%) Strand=Plus/Minus Query 11445 AAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACG 11504 ||||| ||| | ||||| | |||||||||| ||||||| ||||||||||||| ||| Sbjct 654403 AAAAAGCAAGT-GGCCCGTACGGGGATCGAACCCGCGACCTTGGCGTTATTAGCACCACG 654345 Query 11505 CTCTRACCAACTGAGCTAATGGGCC 11529 |||| |||||||||||||| |||| Sbjct 654344 CTCTAACCAACTGAGCTAACCGGCC 654320 >seq371 Length=585442 Score = 82.4 bits (90), Expect = 4e-11 Identities = 56/64 (88%), Gaps = 0/64 (0%) Strand=Plus/Plus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| ||||||| ||||||||||||| ||||||| ||| |||||||||| || Sbjct 553619 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCTACTGAGCTAACCGG 553678 Query 11528 CCGT 11531 |||| Sbjct 553679 CCGT 553682 >seq215 Length=11859676 Score = 82.4 bits (90), Expect = 4e-11 Identities = 55/62 (89%), Gaps = 0/62 (0%) Strand=Plus/Plus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| || Sbjct 2635132 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 2635191 Query 11528 CC 11529 || Sbjct 2635192 CC 2635193 Lambda K H 0.638 0.409 0.919 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 261443641533148