Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Columba_20livia_20[refseq_20GCF_5F000337935.1_202013-02-11]
14,923 sequences; 1,107,989,085 total letters
Query= NC_005906.1
Length=81755
Score E
Sequences producing significant alignments: (Bits) Value
seq519 89.7 3e-13
seq233 84.2 1e-11
seq371 82.4 4e-11
seq215 82.4 4e-11
>seq519
Length=23630376
Score = 89.7 bits (98), Expect = 3e-13
Identities = 69/82 (84%), Gaps = 2/82 (2%)
Strand=Plus/Minus
Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527
|||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| ||
Sbjct 23363285 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 23363226
Query 11528 CCGTCGACGATTGTGATTTTTC 11549
|| ||||||| || |||||
Sbjct 23363225 CC--CGACGATGATGTCTTTTC 23363206
Score = 86.0 bits (94), Expect = 3e-12
Identities = 72/88 (82%), Gaps = 2/88 (2%)
Strand=Plus/Minus
Query 11444 AAAAAATCAA--ATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACG 11501
||||||| || | |||||| | |||||||||| ||||||| |||||||||||||
Sbjct 23361828 AAAAAATGAATGAATGGCCCGTACGGGGATCGAACCCGCGACCTTGGCGTTATTAGCACC 23361769
Query 11502 ACGCTCTRACCAACTGAGCTAATGGGCC 11529
||||||| |||||||||||||| ||||
Sbjct 23361768 ACGCTCTAACCAACTGAGCTAACCGGCC 23361741
Score = 84.2 bits (92), Expect = 1e-11
Identities = 72/89 (81%), Gaps = 2/89 (2%)
Strand=Plus/Minus
Query 11441 AATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500
|| ||||| | || |||||| | |||||||||| ||||||| |||||||||||||
Sbjct 23377467 AAGAAAAACTGAA--TGGCCCGTACGGGGATCGAACCCGCGACCTTGGCGTTATTAGCAC 23377410
Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCC 11529
||||||| |||||||||||||| ||||
Sbjct 23377409 CACGCTCTAACCAACTGAGCTAACCGGCC 23377381
>seq233
Length=2717377
Score = 84.2 bits (92), Expect = 1e-11
Identities = 70/85 (82%), Gaps = 1/85 (1%)
Strand=Plus/Minus
Query 11445 AAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACG 11504
||||| ||| | ||||| | |||||||||| ||||||| ||||||||||||| |||
Sbjct 654403 AAAAAGCAAGT-GGCCCGTACGGGGATCGAACCCGCGACCTTGGCGTTATTAGCACCACG 654345
Query 11505 CTCTRACCAACTGAGCTAATGGGCC 11529
|||| |||||||||||||| ||||
Sbjct 654344 CTCTAACCAACTGAGCTAACCGGCC 654320
>seq371
Length=585442
Score = 82.4 bits (90), Expect = 4e-11
Identities = 56/64 (88%), Gaps = 0/64 (0%)
Strand=Plus/Plus
Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527
|||||||||| ||||||| ||||||||||||| ||||||| ||| |||||||||| ||
Sbjct 553619 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCTACTGAGCTAACCGG 553678
Query 11528 CCGT 11531
||||
Sbjct 553679 CCGT 553682
>seq215
Length=11859676
Score = 82.4 bits (90), Expect = 4e-11
Identities = 55/62 (89%), Gaps = 0/62 (0%)
Strand=Plus/Plus
Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527
|||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| ||
Sbjct 2635132 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 2635191
Query 11528 CC 11529
||
Sbjct 2635192 CC 2635193
Lambda K H
0.638 0.409 0.919
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 261443641533148
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |