Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Columba_20livia_20[refseq_20GCF_5F000337935.1_202013-02-11]
14,923 sequences; 1,107,989,085 total letters
Query= NC_006150.1
Length=221454
Score E
Sequences producing significant alignments: (Bits) Value
seq567 196 7e-45
seq685 105 9e-18
>seq567
Length=396540
Score = 196 bits (216), Expect = 7e-45
Identities = 222/298 (74%), Gaps = 0/298 (0%)
Strand=Plus/Plus
Query 8679 GGAACGCGGCCAACGGACACCCTTTGACGTTGCTACAGACTAGAGACTGGATAGTTGCAC 8738
|||| |||| || ||||| ||||| |||||| | |||| || ||| | | ||
Sbjct 54361 GGAAGGCGGTGAAGGGACAGCCTTTCACGTTGTTGCAGATGAGCTTCTGTAAGGAGGCGG 54420
Query 8739 TCTTGACGATCCCAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGG 8798
| |||| ||| | || ||||| | |||||||||||||| || |||||||| | ||||
Sbjct 54421 TATTGATGATTTCGAAGCCCACTTTGCCGCCGAAGGTGCTCGGCTTCCAGTACTCGGGGG 54480
Query 8799 AGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGC 8858
|||||||| ||||| |||| || |||||||| || || || || |||| ||| | ||
Sbjct 54481 AGCAGATGGCGTTCCCCATCAGTCCTTTGAGAGAGAAGGGCGCTCCCATCTCCACCATCG 54540
Query 8859 TCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCA 8918
|||| |||||||||||| || || ||||||||||| | || || | |||| |||||
Sbjct 54541 TCTCGCCGAAGATGGCGCCTGGCCGCGGCTTTTCCACAAGGAGGCCTGGATACAGCTCCA 54600
Query 8919 CAGCCTCGATGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATTTCCTTTTCTCCTGT 8976
|| ||||||||||||||||| | ||||| || || ||||| |||||||||||
Sbjct 54601 TGGCATCGATGTCTCCGTAAAGCTCTTCCAGTTCAGCCGCCATTTCTTTTTCTCCTGT 54658
Score = 156 bits (172), Expect = 6e-33
Identities = 178/239 (74%), Gaps = 0/239 (0%)
Strand=Plus/Plus
Query 9625 AGTCGAGTGGTCTGAAACAGTTGTTCGTCACTCCATTCTGGATGTTCTCGTTTCAGAACA 9684
|||||||| || || || || || |||||| ||| |||||||| || | || || |
Sbjct 56405 AGTCGAGTTGTTTGGAAGAGCTGCTCGTCATCCCACTCTGGATGCTCCTGCTTGAGGATG 56464
Query 9685 TCGCACACTCTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATCATGAGACCAGGCACC 9744
|| || || | |||||| ||||| |||||||| |||||||||||||| ||||| || |||
Sbjct 56465 TCACAGACCCGGTTGTGCTCCCTCAGCCAGATTGTAGCGTACATCATCAGACCCGGGACC 56524
Query 9745 AGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATATTTTCGGGCACTTCGGGAGGATAG 9804
| ||||| |||| || || |||| | ||| | ||| ||||| | ||||| |||
Sbjct 56525 AAACCAAACACCTCCTGCCCCACAGAGAACTGCAGGTGTTCCGGCACGTGCGGAGGGTAG 56584
Query 9805 ATCATGTGCACCTGGACATCTTTGACCGAGGGGGGATACATTTCACCGTCAATAATCTG 9863
| ||| | ||||| || || |||| |||||||||||||| |||||||| |||||
Sbjct 56585 AGCATCTCTGCCTGGGTGTCCTTCACCGTTGGGGGATACATTTCTCCGTCAATCATCTG 56643
Score = 84.2 bits (92), Expect = 3e-11
Identities = 116/161 (72%), Gaps = 1/161 (1%)
Strand=Plus/Plus
Query 10289 ACCTTTGACCCCAAGAGGAGTTGGACAATCGTGAGGAACCGGAGGTAGAATCCTTGCGTA 10348
|||||| || || | || ||||| || || | || || || || | |||| |||
Sbjct 58358 ACCTTTAACACCCATTGGTGTTGGGCAGTCAAGTCCTACTGGTGGAAGGCTTCTTGTGTA 58417
Query 10349 ATAGGAGAGATTGGAGAAAGCTTCCCAGCTTGGGTATTCGTAGTCCGCGTTGTAGATGGG 10408
|||||| |||||||| ||||||||||| || ||| ||| || ||||||| | ||
Sbjct 58418 ATAGGAAAGATTGGAATAAGCTTCCCAGTTTTTGTAACTGTAATCACTGTTGTAGGTTGG 58477
Query 10409 AGGGCTGTCAATCAAATCGGATCTACCTGAACAAG-CAAAA 10448
|||||||||||||| | ||||| ||| | ||| |||||
Sbjct 58478 TGGGCTGTCAATCAAGTGTGATCTGGCTGGAAAAGACAAAA 58518
>seq685
Length=1810514
Score = 105 bits (116), Expect = 9e-18
Identities = 165/236 (70%), Gaps = 0/236 (0%)
Strand=Plus/Plus
Query 8741 TTGACGATCCCAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGGAG 8800
||||| ||| |||| || ||||||| || || ||||| |||||||| | ||||||
Sbjct 1604990 TTGACTATCTCAAAGCCAGTTGCTCCGCCAAACGTACTGGGCTTCCAGTACTCTGGGGAG 1605049
Query 8801 CAGATGACGTTCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGCTC 8860
|||||| ||| | | || || || ||||||||||||| || | ||| | |||||
Sbjct 1605050 CAGATGGGGTTTCCGAGAAGCCCCTTCAGGGAAAACGGAGATCCGATCTCAACCATGCTT 1605109
Query 8861 TCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCACA 8920
|| || || || | || || | || || || | || || || ||| ||||||| |
Sbjct 1605110 TCTCCAAAAATACCATTTGGTTGAGGTTTCTCAAGCAGCAAGCCCAGGTAGAACTCCAGA 1605169
Query 8921 GCCTCGATGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATTTCCTTTTCTCCTGT 8976
|| ||||||||||| || || | ||||| || || |||| | ||||||||
Sbjct 1605170 GCGTCGATGTCTCCATACAGCTCTTCCAGTTCTGCTGCCTTTTCTTCCTCTCCTGT 1605225
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 708392633555120
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |