Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Columba_20livia_20[refseq_20GCF_5F000337935.1_202013-02-11] 14,923 sequences; 1,107,989,085 total letters Query= NC_006150.1 Length=221454 Score E Sequences producing significant alignments: (Bits) Value seq567 196 7e-45 seq685 105 9e-18 >seq567 Length=396540 Score = 196 bits (216), Expect = 7e-45 Identities = 222/298 (74%), Gaps = 0/298 (0%) Strand=Plus/Plus Query 8679 GGAACGCGGCCAACGGACACCCTTTGACGTTGCTACAGACTAGAGACTGGATAGTTGCAC 8738 |||| |||| || ||||| ||||| |||||| | |||| || ||| | | || Sbjct 54361 GGAAGGCGGTGAAGGGACAGCCTTTCACGTTGTTGCAGATGAGCTTCTGTAAGGAGGCGG 54420 Query 8739 TCTTGACGATCCCAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGG 8798 | |||| ||| | || ||||| | |||||||||||||| || |||||||| | |||| Sbjct 54421 TATTGATGATTTCGAAGCCCACTTTGCCGCCGAAGGTGCTCGGCTTCCAGTACTCGGGGG 54480 Query 8799 AGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGC 8858 |||||||| ||||| |||| || |||||||| || || || || |||| ||| | || Sbjct 54481 AGCAGATGGCGTTCCCCATCAGTCCTTTGAGAGAGAAGGGCGCTCCCATCTCCACCATCG 54540 Query 8859 TCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCA 8918 |||| |||||||||||| || || ||||||||||| | || || | |||| ||||| Sbjct 54541 TCTCGCCGAAGATGGCGCCTGGCCGCGGCTTTTCCACAAGGAGGCCTGGATACAGCTCCA 54600 Query 8919 CAGCCTCGATGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATTTCCTTTTCTCCTGT 8976 || ||||||||||||||||| | ||||| || || ||||| ||||||||||| Sbjct 54601 TGGCATCGATGTCTCCGTAAAGCTCTTCCAGTTCAGCCGCCATTTCTTTTTCTCCTGT 54658 Score = 156 bits (172), Expect = 6e-33 Identities = 178/239 (74%), Gaps = 0/239 (0%) Strand=Plus/Plus Query 9625 AGTCGAGTGGTCTGAAACAGTTGTTCGTCACTCCATTCTGGATGTTCTCGTTTCAGAACA 9684 |||||||| || || || || || |||||| ||| |||||||| || | || || | Sbjct 56405 AGTCGAGTTGTTTGGAAGAGCTGCTCGTCATCCCACTCTGGATGCTCCTGCTTGAGGATG 56464 Query 9685 TCGCACACTCTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATCATGAGACCAGGCACC 9744 || || || | |||||| ||||| |||||||| |||||||||||||| ||||| || ||| Sbjct 56465 TCACAGACCCGGTTGTGCTCCCTCAGCCAGATTGTAGCGTACATCATCAGACCCGGGACC 56524 Query 9745 AGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATATTTTCGGGCACTTCGGGAGGATAG 9804 | ||||| |||| || || |||| | ||| | ||| ||||| | ||||| ||| Sbjct 56525 AAACCAAACACCTCCTGCCCCACAGAGAACTGCAGGTGTTCCGGCACGTGCGGAGGGTAG 56584 Query 9805 ATCATGTGCACCTGGACATCTTTGACCGAGGGGGGATACATTTCACCGTCAATAATCTG 9863 | ||| | ||||| || || |||| |||||||||||||| |||||||| ||||| Sbjct 56585 AGCATCTCTGCCTGGGTGTCCTTCACCGTTGGGGGATACATTTCTCCGTCAATCATCTG 56643 Score = 84.2 bits (92), Expect = 3e-11 Identities = 116/161 (72%), Gaps = 1/161 (1%) Strand=Plus/Plus Query 10289 ACCTTTGACCCCAAGAGGAGTTGGACAATCGTGAGGAACCGGAGGTAGAATCCTTGCGTA 10348 |||||| || || | || ||||| || || | || || || || | |||| ||| Sbjct 58358 ACCTTTAACACCCATTGGTGTTGGGCAGTCAAGTCCTACTGGTGGAAGGCTTCTTGTGTA 58417 Query 10349 ATAGGAGAGATTGGAGAAAGCTTCCCAGCTTGGGTATTCGTAGTCCGCGTTGTAGATGGG 10408 |||||| |||||||| ||||||||||| || ||| ||| || ||||||| | || Sbjct 58418 ATAGGAAAGATTGGAATAAGCTTCCCAGTTTTTGTAACTGTAATCACTGTTGTAGGTTGG 58477 Query 10409 AGGGCTGTCAATCAAATCGGATCTACCTGAACAAG-CAAAA 10448 |||||||||||||| | ||||| ||| | ||| ||||| Sbjct 58478 TGGGCTGTCAATCAAGTGTGATCTGGCTGGAAAAGACAAAA 58518 >seq685 Length=1810514 Score = 105 bits (116), Expect = 9e-18 Identities = 165/236 (70%), Gaps = 0/236 (0%) Strand=Plus/Plus Query 8741 TTGACGATCCCAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGGAG 8800 ||||| ||| |||| || ||||||| || || ||||| |||||||| | |||||| Sbjct 1604990 TTGACTATCTCAAAGCCAGTTGCTCCGCCAAACGTACTGGGCTTCCAGTACTCTGGGGAG 1605049 Query 8801 CAGATGACGTTCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGCTC 8860 |||||| ||| | | || || || ||||||||||||| || | ||| | ||||| Sbjct 1605050 CAGATGGGGTTTCCGAGAAGCCCCTTCAGGGAAAACGGAGATCCGATCTCAACCATGCTT 1605109 Query 8861 TCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCACA 8920 || || || || | || || | || || || | || || || ||| ||||||| | Sbjct 1605110 TCTCCAAAAATACCATTTGGTTGAGGTTTCTCAAGCAGCAAGCCCAGGTAGAACTCCAGA 1605169 Query 8921 GCCTCGATGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATTTCCTTTTCTCCTGT 8976 || ||||||||||| || || | ||||| || || |||| | |||||||| Sbjct 1605170 GCGTCGATGTCTCCATACAGCTCTTCCAGTTCTGCTGCCTTTTCTTCCTCTCCTGT 1605225 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 708392633555120