Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Columba_20livia_20[refseq_20GCF_5F000337935.1_202013-02-11]
14,923 sequences; 1,107,989,085 total letters
Query= NC_006639.1
Length=24748
Score E
Sequences producing significant alignments: (Bits) Value
seq1221 141 1e-29
seq185 132 8e-27
>seq1221
Length=266329
Score = 141 bits (156), Expect = 1e-29
Identities = 194/271 (72%), Gaps = 0/271 (0%)
Strand=Plus/Plus
Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491
||| ||||| || |||| || || || |||||||| || ||||||||||| || ||
Sbjct 32256 CGCCAAGCGCCACCGCAAGGTGCTGCGCGACAACATCCAGGGCATCACCAAGCCGGCCAT 32315
Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551
||| || |||||||| || || || |||||||| |||| || | |||| || ||||
Sbjct 32316 CCGCCGCCTGGCTCGGCGCGGCGGCGTCAAGCGCATCTCGGGGCTCATCTACGAGGAGAC 32375
Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611
||| | || ||||| | ||||| ||| ||| |||| || ||| || ||| |||||
Sbjct 32376 TCGCGGAGTGCTGAAGGTGTTCCTGGAGAACGTGATCCGCGACGCTGTCACCTACACCGA 32435
Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671
|||||| || | ||||| || || ||||||| | ||||| || | || || || ||
Sbjct 32436 GCACGCCAAGAGGAAGACCGTGACAGCCATGGACGTGGTCTACGCCCTCAAGCGCCAGGG 32495
Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAATCT 16702
||| | | ||||| || || ||||| ||
Sbjct 32496 CCGCACTCTCTATGGCTTCGGCGGTTAAACT 32526
Score = 141 bits (156), Expect = 1e-29
Identities = 194/271 (72%), Gaps = 0/271 (0%)
Strand=Plus/Minus
Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491
||| ||||| || |||| || || || |||||||| || ||||||||||| || ||
Sbjct 34019 CGCCAAGCGCCACCGCAAGGGGCTGCGCGACAACATCCAGGGCATCACCAAGCCGGCCAT 33960
Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551
||| || |||||||| || || || |||||||| |||| || | |||| || ||||
Sbjct 33959 CCGCCGCCTGGCTCGGCGCGGCGGCGTCAAGCGCATCTCGGGGCTCATCTACGAGGAGAC 33900
Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611
||| | || ||||| | ||||| ||| ||| |||| || ||| || ||| |||||
Sbjct 33899 TCGCGGAGTGCTGAAGGTGTTCCTGGAGAACGTGATCCGCGACGCTGTCACCTACACCGA 33840
Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671
|||||| || | ||||| || || ||||||| | ||||| || | || || || ||
Sbjct 33839 GCACGCCAAGAGGAAGACCGTGACAGCCATGGACGTGGTCTACGCCCTCAAGCGCCAGGG 33780
Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAATCT 16702
||| | | ||||| || || ||||| ||
Sbjct 33779 CCGCACTCTCTATGGCTTCGGCGGTTAAACT 33749
Score = 132 bits (146), Expect = 8e-27
Identities = 175/243 (72%), Gaps = 0/243 (0%)
Strand=Plus/Plus
Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491
||| ||||| || |||| || || || |||||||| || ||||||||||| || ||
Sbjct 2142 CGCCAAGCGCCACCGCAAGGTGCTGCGCGACAACATCCAGGGCATCACCAAGCCGGCCAT 2201
Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551
||| || |||||||| || || || |||||||| |||| || | |||| || ||||
Sbjct 2202 CCGCCGCCTGGCTCGGCGCGGCGGCGTCAAGCGCATCTCGGGGCTCATCTACGAGGAGAC 2261
Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611
||| | || ||||| | ||||| ||| ||| |||| || ||| || ||| |||||
Sbjct 2262 TCGCGGAGTGCTGAAGGTGTTCCTGGAGAACGTGATCCGCGACGCTGTCACCTACACCGA 2321
Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671
|||||| || | ||||| || || ||||||| | ||||| || | || || || ||
Sbjct 2322 GCACGCCAAGAGGAAGACCGTGACAGCCATGGACGTGGTCTACGCCCTCAAGCGCCAGGG 2381
Query 16672 CCG 16674
||
Sbjct 2382 ACG 2384
Score = 132 bits (146), Expect = 8e-27
Identities = 175/243 (72%), Gaps = 0/243 (0%)
Strand=Plus/Minus
Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491
||| ||||| || |||| || || || |||||||| || ||||||||||| || ||
Sbjct 11353 CGCCAAGCGCCACCGCAAGGTGCTGCGCGACAACATCCAGGGCATCACCAAGCCGGCCAT 11294
Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551
||| || |||||||| || || || |||||||| |||| || | |||| || ||||
Sbjct 11293 CCGCCGCCTGGCTCGGCGCGGCGGCGTCAAGCGCATCTCGGGGCTCATCTACGAGGAGAC 11234
Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611
||| | || ||||| | ||||| ||| ||| |||| || ||| || ||| |||||
Sbjct 11233 TCGCGGAGTGCTGAAGGTGTTCCTGGAGAACGTGATCCGCGACGCTGTCACCTACACCGA 11174
Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671
|||||| || | ||||| || || ||||||| | ||||| || | || || || ||
Sbjct 11173 GCACGCCAAGAGGAAGACCGTGACAGCCATGGACGTGGTCTACGCCCTCAAGCGCCAGGG 11114
Query 16672 CCG 16674
||
Sbjct 11113 ACG 11111
Score = 132 bits (146), Expect = 8e-27
Identities = 162/221 (73%), Gaps = 0/221 (0%)
Strand=Plus/Plus
Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513
|| || || |||||||| || ||||||||||| || ||||| || |||||||| || ||
Sbjct 57744 CTGCGCGACAACATCCAGGGCATCACCAAGCCGGCCATCCGCCGCCTGGCTCGGCGCGGC 57803
Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573
|| |||||||| |||| || | |||| || |||| ||| | || ||||| | |||
Sbjct 57804 GGCGTCAAGCGCATCTCGGGGCTCATCTACGAGGAGACTCGCGGAGTGCTGAAGGTGTTC 57863
Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633
|| ||| ||| |||| || ||| || ||| ||||||||||| || | ||||| ||
Sbjct 57864 CTGGAGAACGTGATCCGCGACGCTGTCACCTACACCGAGCACGCCAAGAGGAAGACCGTG 57923
Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCG 16674
|| ||||||| | |||||||| | || || || || ||
Sbjct 57924 ACAGCCATGGACGTGGTCTATGCTCTTAAGCGCCAGGGACG 57964
Score = 132 bits (146), Expect = 8e-27
Identities = 175/243 (72%), Gaps = 0/243 (0%)
Strand=Plus/Minus
Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491
||| ||||| || |||| || || || |||||||| || ||||||||||| || ||
Sbjct 61937 CGCCAAGCGCCACCGCAAGGTGCTGCGCGACAACATCCAGGGCATCACCAAGCCGGCCAT 61878
Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551
||| || |||||||| || || || |||||||| |||| || | |||| || ||||
Sbjct 61877 CCGCCGCCTGGCTCGGCGCGGCGGCGTCAAGCGCATCTCGGGGCTCATCTACGAGGAGAC 61818
Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611
||| | || ||||| | ||||| ||| ||| |||| || ||| || ||| |||||
Sbjct 61817 TCGCGGAGTGCTGAAGGTGTTCCTGGAGAACGTGATCCGCGACGCTGTCACCTACACCGA 61758
Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671
|||||| || | ||||| || || ||||||| | ||||| || | || || || ||
Sbjct 61757 GCACGCCAAGAGGAAGACCGTGACAGCCATGGACGTGGTCTACGCCCTCAAGCGCCAGGG 61698
Query 16672 CCG 16674
||
Sbjct 61697 ACG 61695
>seq185
Length=400649
Score = 132 bits (146), Expect = 8e-27
Identities = 186/261 (71%), Gaps = 0/261 (0%)
Strand=Plus/Plus
Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491
||| ||||| || |||| || || || |||||||| || ||||||||||| || ||
Sbjct 370914 CGCCAAGCGCCACCGCAAGGTGCTGCGCGACAACATCCAGGGCATCACCAAGCCGGCCAT 370973
Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551
||| || |||||||| || || || |||||||| |||| || | |||| || ||||
Sbjct 370974 CCGCCGCCTGGCTCGGCGCGGCGGCGTCAAGCGCATCTCGGGGCTCATCTACGAGGAGAC 371033
Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611
||| | || ||||| | ||||| ||| ||| |||| || ||| || ||| |||||
Sbjct 371034 TCGCGGAGTGCTGAAGGTGTTCCTGGAGAACGTGATCCGCGACGCTGTCACCTACACCGA 371093
Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671
|||||| || | ||||| || || ||||||| | ||||| || | || || || ||
Sbjct 371094 GCACGCCAAGAGGAAGACCGTGACAGCCATGGACGTGGTCTACGCCCTCAAGCGCCAGGG 371153
Query 16672 CCGTAAGATTTATGGTTTTGG 16692
|| | | || ||||| ||
Sbjct 371154 ACGCACCCTCTACGGTTTCGG 371174
Score = 132 bits (146), Expect = 8e-27
Identities = 186/261 (71%), Gaps = 0/261 (0%)
Strand=Plus/Minus
Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491
||| ||||| || |||| || || || |||||||| || ||||||||||| || ||
Sbjct 377248 CGCCAAGCGCCACCGCAAGGTGCTGCGCGACAACATCCAGGGCATCACCAAGCCGGCCAT 377189
Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551
||| || |||||||| || || || |||||||| |||| || | |||| || ||||
Sbjct 377188 CCGCCGCCTGGCTCGGCGCGGCGGCGTCAAGCGCATCTCGGGGCTCATCTACGAGGAGAC 377129
Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611
||| | || ||||| | ||||| ||| ||| |||| || ||| || ||| |||||
Sbjct 377128 TCGCGGAGTGCTGAAGGTGTTCCTGGAGAACGTGATCCGCGACGCTGTCACCTACACCGA 377069
Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671
|||||| || | ||||| || || ||||||| | ||||| || | || || || ||
Sbjct 377068 GCACGCCAAGAGGAAGACCGTGACAGCCATGGACGTGGTCTACGCCCTCAAGCGCCAGGG 377009
Query 16672 CCGTAAGATTTATGGTTTTGG 16692
|| | | || ||||| ||
Sbjct 377008 ACGCACCCTCTACGGTTTCGG 376988
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 79061555796639
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