Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Columba_20livia_20[refseq_20GCF_5F000337935.1_202013-02-11] 14,923 sequences; 1,107,989,085 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq1221 141 1e-29 seq185 132 8e-27 >seq1221 Length=266329 Score = 141 bits (156), Expect = 1e-29 Identities = 194/271 (72%), Gaps = 0/271 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| || |||| || || || |||||||| || ||||||||||| || || Sbjct 32256 CGCCAAGCGCCACCGCAAGGTGCTGCGCGACAACATCCAGGGCATCACCAAGCCGGCCAT 32315 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || |||||||| || || || |||||||| |||| || | |||| || |||| Sbjct 32316 CCGCCGCCTGGCTCGGCGCGGCGGCGTCAAGCGCATCTCGGGGCTCATCTACGAGGAGAC 32375 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 ||| | || ||||| | ||||| ||| ||| |||| || ||| || ||| ||||| Sbjct 32376 TCGCGGAGTGCTGAAGGTGTTCCTGGAGAACGTGATCCGCGACGCTGTCACCTACACCGA 32435 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || | ||||| || || ||||||| | ||||| || | || || || || Sbjct 32436 GCACGCCAAGAGGAAGACCGTGACAGCCATGGACGTGGTCTACGCCCTCAAGCGCCAGGG 32495 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAATCT 16702 ||| | | ||||| || || ||||| || Sbjct 32496 CCGCACTCTCTATGGCTTCGGCGGTTAAACT 32526 Score = 141 bits (156), Expect = 1e-29 Identities = 194/271 (72%), Gaps = 0/271 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| || |||| || || || |||||||| || ||||||||||| || || Sbjct 34019 CGCCAAGCGCCACCGCAAGGGGCTGCGCGACAACATCCAGGGCATCACCAAGCCGGCCAT 33960 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || |||||||| || || || |||||||| |||| || | |||| || |||| Sbjct 33959 CCGCCGCCTGGCTCGGCGCGGCGGCGTCAAGCGCATCTCGGGGCTCATCTACGAGGAGAC 33900 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 ||| | || ||||| | ||||| ||| ||| |||| || ||| || ||| ||||| Sbjct 33899 TCGCGGAGTGCTGAAGGTGTTCCTGGAGAACGTGATCCGCGACGCTGTCACCTACACCGA 33840 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || | ||||| || || ||||||| | ||||| || | || || || || Sbjct 33839 GCACGCCAAGAGGAAGACCGTGACAGCCATGGACGTGGTCTACGCCCTCAAGCGCCAGGG 33780 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAATCT 16702 ||| | | ||||| || || ||||| || Sbjct 33779 CCGCACTCTCTATGGCTTCGGCGGTTAAACT 33749 Score = 132 bits (146), Expect = 8e-27 Identities = 175/243 (72%), Gaps = 0/243 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| || |||| || || || |||||||| || ||||||||||| || || Sbjct 2142 CGCCAAGCGCCACCGCAAGGTGCTGCGCGACAACATCCAGGGCATCACCAAGCCGGCCAT 2201 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || |||||||| || || || |||||||| |||| || | |||| || |||| Sbjct 2202 CCGCCGCCTGGCTCGGCGCGGCGGCGTCAAGCGCATCTCGGGGCTCATCTACGAGGAGAC 2261 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 ||| | || ||||| | ||||| ||| ||| |||| || ||| || ||| ||||| Sbjct 2262 TCGCGGAGTGCTGAAGGTGTTCCTGGAGAACGTGATCCGCGACGCTGTCACCTACACCGA 2321 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || | ||||| || || ||||||| | ||||| || | || || || || Sbjct 2322 GCACGCCAAGAGGAAGACCGTGACAGCCATGGACGTGGTCTACGCCCTCAAGCGCCAGGG 2381 Query 16672 CCG 16674 || Sbjct 2382 ACG 2384 Score = 132 bits (146), Expect = 8e-27 Identities = 175/243 (72%), Gaps = 0/243 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| || |||| || || || |||||||| || ||||||||||| || || Sbjct 11353 CGCCAAGCGCCACCGCAAGGTGCTGCGCGACAACATCCAGGGCATCACCAAGCCGGCCAT 11294 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || |||||||| || || || |||||||| |||| || | |||| || |||| Sbjct 11293 CCGCCGCCTGGCTCGGCGCGGCGGCGTCAAGCGCATCTCGGGGCTCATCTACGAGGAGAC 11234 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 ||| | || ||||| | ||||| ||| ||| |||| || ||| || ||| ||||| Sbjct 11233 TCGCGGAGTGCTGAAGGTGTTCCTGGAGAACGTGATCCGCGACGCTGTCACCTACACCGA 11174 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || | ||||| || || ||||||| | ||||| || | || || || || Sbjct 11173 GCACGCCAAGAGGAAGACCGTGACAGCCATGGACGTGGTCTACGCCCTCAAGCGCCAGGG 11114 Query 16672 CCG 16674 || Sbjct 11113 ACG 11111 Score = 132 bits (146), Expect = 8e-27 Identities = 162/221 (73%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || || |||||||| || ||||||||||| || ||||| || |||||||| || || Sbjct 57744 CTGCGCGACAACATCCAGGGCATCACCAAGCCGGCCATCCGCCGCCTGGCTCGGCGCGGC 57803 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || |||||||| |||| || | |||| || |||| ||| | || ||||| | ||| Sbjct 57804 GGCGTCAAGCGCATCTCGGGGCTCATCTACGAGGAGACTCGCGGAGTGCTGAAGGTGTTC 57863 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 || ||| ||| |||| || ||| || ||| ||||||||||| || | ||||| || Sbjct 57864 CTGGAGAACGTGATCCGCGACGCTGTCACCTACACCGAGCACGCCAAGAGGAAGACCGTG 57923 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCG 16674 || ||||||| | |||||||| | || || || || || Sbjct 57924 ACAGCCATGGACGTGGTCTATGCTCTTAAGCGCCAGGGACG 57964 Score = 132 bits (146), Expect = 8e-27 Identities = 175/243 (72%), Gaps = 0/243 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| || |||| || || || |||||||| || ||||||||||| || || Sbjct 61937 CGCCAAGCGCCACCGCAAGGTGCTGCGCGACAACATCCAGGGCATCACCAAGCCGGCCAT 61878 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || |||||||| || || || |||||||| |||| || | |||| || |||| Sbjct 61877 CCGCCGCCTGGCTCGGCGCGGCGGCGTCAAGCGCATCTCGGGGCTCATCTACGAGGAGAC 61818 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 ||| | || ||||| | ||||| ||| ||| |||| || ||| || ||| ||||| Sbjct 61817 TCGCGGAGTGCTGAAGGTGTTCCTGGAGAACGTGATCCGCGACGCTGTCACCTACACCGA 61758 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || | ||||| || || ||||||| | ||||| || | || || || || Sbjct 61757 GCACGCCAAGAGGAAGACCGTGACAGCCATGGACGTGGTCTACGCCCTCAAGCGCCAGGG 61698 Query 16672 CCG 16674 || Sbjct 61697 ACG 61695 >seq185 Length=400649 Score = 132 bits (146), Expect = 8e-27 Identities = 186/261 (71%), Gaps = 0/261 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| || |||| || || || |||||||| || ||||||||||| || || Sbjct 370914 CGCCAAGCGCCACCGCAAGGTGCTGCGCGACAACATCCAGGGCATCACCAAGCCGGCCAT 370973 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || |||||||| || || || |||||||| |||| || | |||| || |||| Sbjct 370974 CCGCCGCCTGGCTCGGCGCGGCGGCGTCAAGCGCATCTCGGGGCTCATCTACGAGGAGAC 371033 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 ||| | || ||||| | ||||| ||| ||| |||| || ||| || ||| ||||| Sbjct 371034 TCGCGGAGTGCTGAAGGTGTTCCTGGAGAACGTGATCCGCGACGCTGTCACCTACACCGA 371093 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || | ||||| || || ||||||| | ||||| || | || || || || Sbjct 371094 GCACGCCAAGAGGAAGACCGTGACAGCCATGGACGTGGTCTACGCCCTCAAGCGCCAGGG 371153 Query 16672 CCGTAAGATTTATGGTTTTGG 16692 || | | || ||||| || Sbjct 371154 ACGCACCCTCTACGGTTTCGG 371174 Score = 132 bits (146), Expect = 8e-27 Identities = 186/261 (71%), Gaps = 0/261 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| || |||| || || || |||||||| || ||||||||||| || || Sbjct 377248 CGCCAAGCGCCACCGCAAGGTGCTGCGCGACAACATCCAGGGCATCACCAAGCCGGCCAT 377189 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || |||||||| || || || |||||||| |||| || | |||| || |||| Sbjct 377188 CCGCCGCCTGGCTCGGCGCGGCGGCGTCAAGCGCATCTCGGGGCTCATCTACGAGGAGAC 377129 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 ||| | || ||||| | ||||| ||| ||| |||| || ||| || ||| ||||| Sbjct 377128 TCGCGGAGTGCTGAAGGTGTTCCTGGAGAACGTGATCCGCGACGCTGTCACCTACACCGA 377069 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || | ||||| || || ||||||| | ||||| || | || || || || Sbjct 377068 GCACGCCAAGAGGAAGACCGTGACAGCCATGGACGTGGTCTACGCCCTCAAGCGCCAGGG 377009 Query 16672 CCGTAAGATTTATGGTTTTGG 16692 || | | || ||||| || Sbjct 377008 ACGCACCCTCTACGGTTTCGG 376988 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79061555796639