Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Columba_20livia_20[refseq_20GCF_5F000337935.1_202013-02-11] 14,923 sequences; 1,107,989,085 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq243 95.1 1e-14 >seq243 Length=25666195 Score = 95.1 bits (104), Expect = 1e-14 Identities = 108/144 (75%), Gaps = 1/144 (1%) Strand=Plus/Minus Query 21490 ATGCAAACCTTCATCCCTACTTATTAATTCATTAGAAAATGTTAAACCGGGCATTAATCC 21549 || || |||| |||| || || || | ||| |||||||| || | || ||||||||||| Sbjct 20270019 ATTCATACCT-CATCTCTGCTGATGAGTTCGTTAGAAAAAGTGAGTCCAGGCATTAATCC 20269961 Query 21550 TCTCTTTTTTAACCAAAATATTGACGCAAATGCTCCTGAAAAGAAAATGCCCTCAACGGC 21609 || || || | |||||| ||||| ||||| | || |||||||| || || || || || Sbjct 20269960 CCTTTTCTTCAGCCAAAAAATTGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCCACCGC 20269901 Query 21610 AGCAAATGCAACTAATCGTTCACC 21633 ||||| || |||| ||||| || Sbjct 20269900 TGCAAAAGCTACTACACGTTCTCC 20269877 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531801580554520