Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Columba_20livia_20[refseq_20GCF_5F000337935.1_202013-02-11] 14,923 sequences; 1,107,989,085 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq266 114 3e-20 seq682 95.1 3e-14 >seq266 Length=585698 Score = 114 bits (126), Expect = 3e-20 Identities = 117/153 (76%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 364111 GCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATTGAGACAGGAACACCCTATATG 364170 || ||| |||| |||| |||||||| || ||||||| ||||| || || || || ||| Sbjct 268048 GCCCAGCAGCTCTGGTACGCCATCATCGAGTCGCAGACGGAGACCGGCACGCCGTACATG 268107 Query 364171 TTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAGCAGCACCTTGGTACAATTCAGCAG 364230 |||||||||| | |||||||||||| |||||||||| |||| || || || || Sbjct 268108 CTGTACAAAGACGCCTGCAACCGCAAGAGCAACCAGCAGAACCTGGGCACCATCAAGTGC 268167 Query 364231 AGCAACCTATGTACCGAGATTATTGAATACACC 364263 |||||||| || || ||||| | || |||||| Sbjct 268168 AGCAACCTGTGCACGGAGATCGTGGAGTACACC 268200 >seq682 Length=840739 Score = 95.1 bits (104), Expect = 3e-14 Identities = 123/168 (73%), Gaps = 4/168 (2%) Strand=Plus/Minus Query 111389 TACAAATGCAAATGAACTTGCAGCAAAAAATGTAAAAATTTGGGATGGAAATGGATCACG 111448 ||||||||| || || || | |||||| || || |||||||||| ||||||||||| Sbjct 497284 TACAAATGCCAAAGAGCTCTCTGCAAAAGGGGTGAAGATTTGGGATGCTAATGGATCACG 497225 Query 111449 TGACTTTCTAGAT--TCAGTTGGTCTTGTCGACAACGAAGAAGGTGATCTCGGACCAGTT 111506 ||| || || ||| ||| ||| | | || || || || ||| | ||||||||| Sbjct 497224 TGAGTTCCTGGATAAGCAG--GGTTTCAGCAGCAGAGAGGAGGGGGATTTGGGACCAGTT 497167 Query 111507 TACGGATTTCAATGGCGCCACTTTGGTGCAGACTACAAAACCATGCAC 111554 || || || || ||| | |||||||| ||||| |||||| |||||| Sbjct 497166 TATGGTTTCCAGTGGAGGCACTTTGGAGCAGAATACAAAGATATGCAC 497119 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303104397569786